miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 18103 0.67 0.921427
Target:  5'- aCGAUCGaugccagGACAGCGGUucgCGAUccgGAUGg -3'
miRNA:   3'- -GCUAGCg------CUGUUGCCAua-GCUG---CUGC- -5'
16296 3' -51.2 NC_004084.1 + 20040 0.67 0.921427
Target:  5'- aCGAUCGCGucucgucaguCGAUGcUGUCGAuacCGACGa -3'
miRNA:   3'- -GCUAGCGCu---------GUUGCcAUAGCU---GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 28269 0.67 0.921427
Target:  5'- -cGUCGCGGCuuCGac-UCGugGACGg -3'
miRNA:   3'- gcUAGCGCUGuuGCcauAGCugCUGC- -5'
16296 3' -51.2 NC_004084.1 + 47918 0.66 0.925549
Target:  5'- gCGAggugccgCGCGAUccagggcaauggcgAGCGGUGUaCGaACGACGu -3'
miRNA:   3'- -GCUa------GCGCUG--------------UUGCCAUA-GC-UGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 13125 0.66 0.927274
Target:  5'- gCGGUCG-GACGAagacuUCGACGGCGa -3'
miRNA:   3'- -GCUAGCgCUGUUgccauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 17550 0.66 0.927274
Target:  5'- aCGAgcgUCGaCGACAGCGGag-CGugGgACGc -3'
miRNA:   3'- -GCU---AGC-GCUGUUGCCauaGCugC-UGC- -5'
16296 3' -51.2 NC_004084.1 + 13719 0.66 0.938139
Target:  5'- aGAUCccCGACuccguugaaGGUAUCGACGAUa -3'
miRNA:   3'- gCUAGc-GCUGuug------CCAUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 11183 0.66 0.932845
Target:  5'- aCGAUCGCGgucgaaGCAGCGuGg---GACGACa -3'
miRNA:   3'- -GCUAGCGC------UGUUGC-CauagCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 35511 0.66 0.927274
Target:  5'- aCGGUCGCGAgugggaCAuccuGCGcGUGaucgaggaccUCGGCGGCGa -3'
miRNA:   3'- -GCUAGCGCU------GU----UGC-CAU----------AGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 43680 0.67 0.915302
Target:  5'- cCGAgugccUGCGACgGACGGgcgcGUCGACGAa- -3'
miRNA:   3'- -GCUa----GCGCUG-UUGCCa---UAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 30419 0.71 0.72122
Target:  5'- uCGAcggGCGGCGACGGaagCGAUGGCGa -3'
miRNA:   3'- -GCUag-CGCUGUUGCCauaGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 8843 0.71 0.710513
Target:  5'- --cUCGuCGACGaaaaGCGGUacuucgaguacGUCGACGACGg -3'
miRNA:   3'- gcuAGC-GCUGU----UGCCA-----------UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 7065 0.71 0.752765
Target:  5'- uGGcCGCGAucCAGCGGU-UCGugGACa -3'
miRNA:   3'- gCUaGCGCU--GUUGCCAuAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 23358 0.69 0.812225
Target:  5'- aCGAUgGCGACcgccugcCGGUAUCaGGCGAUc -3'
miRNA:   3'- -GCUAgCGCUGuu-----GCCAUAG-CUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 57402 0.7 0.802726
Target:  5'- cCGAUCGCGuCGACG---UCGcCGGCGa -3'
miRNA:   3'- -GCUAGCGCuGUUGCcauAGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 58017 0.72 0.656043
Target:  5'- aGAUCGaCGACGucuGCGacAUCGGCGGCGa -3'
miRNA:   3'- gCUAGC-GCUGU---UGCcaUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 39716 0.7 0.802726
Target:  5'- uGAcgGCGACGACGccGUCGACGAgGa -3'
miRNA:   3'- gCUagCGCUGUUGCcaUAGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 1973 0.7 0.784194
Target:  5'- uGAUCGagGACAACGGgaugcagacuacgucGUCGAgGACGc -3'
miRNA:   3'- gCUAGCg-CUGUUGCCa--------------UAGCUgCUGC- -5'
16296 3' -51.2 NC_004084.1 + 6246 0.7 0.783202
Target:  5'- uCGAUCcCGAC-GCGG--UCGACGAUGa -3'
miRNA:   3'- -GCUAGcGCUGuUGCCauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 17251 0.7 0.783202
Target:  5'- gGAUCuGCGGC--CGGUgcaGUCGGCGAUGc -3'
miRNA:   3'- gCUAG-CGCUGuuGCCA---UAGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.