miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 30419 0.71 0.72122
Target:  5'- uCGAcggGCGGCGACGGaagCGAUGGCGa -3'
miRNA:   3'- -GCUag-CGCUGUUGCCauaGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 8843 0.71 0.710513
Target:  5'- --cUCGuCGACGaaaaGCGGUacuucgaguacGUCGACGACGg -3'
miRNA:   3'- gcuAGC-GCUGU----UGCCA-----------UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 20725 0.72 0.699728
Target:  5'- gGAUCcCGuuGcUGGUGUCGACGACGu -3'
miRNA:   3'- gCUAGcGCugUuGCCAUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 58017 0.72 0.656043
Target:  5'- aGAUCGaCGACGucuGCGacAUCGGCGGCGa -3'
miRNA:   3'- gCUAGC-GCUGU---UGCcaUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 48662 0.72 0.656043
Target:  5'- gGAgCGCGACAucacgaaGGUcgCGACGugGg -3'
miRNA:   3'- gCUaGCGCUGUug-----CCAuaGCUGCugC- -5'
16296 3' -51.2 NC_004084.1 + 6246 0.7 0.783202
Target:  5'- uCGAUCcCGAC-GCGG--UCGACGAUGa -3'
miRNA:   3'- -GCUAGcGCUGuUGCCauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 1973 0.7 0.784194
Target:  5'- uGAUCGagGACAACGGgaugcagacuacgucGUCGAgGACGc -3'
miRNA:   3'- gCUAGCg-CUGUUGCCa--------------UAGCUgCUGC- -5'
16296 3' -51.2 NC_004084.1 + 39716 0.7 0.802726
Target:  5'- uGAcgGCGACGACGccGUCGACGAgGa -3'
miRNA:   3'- gCUagCGCUGUUGCcaUAGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 43680 0.67 0.915302
Target:  5'- cCGAgugccUGCGACgGACGGgcgcGUCGACGAa- -3'
miRNA:   3'- -GCUa----GCGCUG-UUGCCa---UAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 48876 0.67 0.915302
Target:  5'- cCGGggcUCGCGACGAUGca--CGACGGCa -3'
miRNA:   3'- -GCU---AGCGCUGUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 5470 0.67 0.915302
Target:  5'- aCGAUCaCGACGACGc---CGACGGCc -3'
miRNA:   3'- -GCUAGcGCUGUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 35229 0.67 0.908903
Target:  5'- aCGAUCGCGAuCGACG---UCGACcaccucuggGACGa -3'
miRNA:   3'- -GCUAGCGCU-GUUGCcauAGCUG---------CUGC- -5'
16296 3' -51.2 NC_004084.1 + 4205 0.67 0.908903
Target:  5'- aGAUC-CGACucgagccgcuGACGGUcggaAUCGACGAgGa -3'
miRNA:   3'- gCUAGcGCUG----------UUGCCA----UAGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 41574 0.67 0.908248
Target:  5'- gCGAUCGCGuccgugaGCuAGCGGagAUCGuCGACu -3'
miRNA:   3'- -GCUAGCGC-------UG-UUGCCa-UAGCuGCUGc -5'
16296 3' -51.2 NC_004084.1 + 25102 0.67 0.90223
Target:  5'- ---aCGCGGCGGCGGcaggUGUUGACGcucaACGg -3'
miRNA:   3'- gcuaGCGCUGUUGCC----AUAGCUGC----UGC- -5'
16296 3' -51.2 NC_004084.1 + 3962 0.67 0.895287
Target:  5'- aCGAUcCGCGGCGACaGUG-CGGCG-Ca -3'
miRNA:   3'- -GCUA-GCGCUGUUGcCAUaGCUGCuGc -5'
16296 3' -51.2 NC_004084.1 + 44354 0.68 0.888077
Target:  5'- uCGGUCGCgguGACAACGG---CGAgCGACa -3'
miRNA:   3'- -GCUAGCG---CUGUUGCCauaGCU-GCUGc -5'
16296 3' -51.2 NC_004084.1 + 17161 0.68 0.888077
Target:  5'- aCGAUCGcCGGCGACG---UCGAaGGCGa -3'
miRNA:   3'- -GCUAGC-GCUGUUGCcauAGCUgCUGC- -5'
16296 3' -51.2 NC_004084.1 + 23358 0.69 0.812225
Target:  5'- aCGAUgGCGACcgccugcCGGUAUCaGGCGAUc -3'
miRNA:   3'- -GCUAgCGCUGuu-----GCCAUAG-CUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 57402 0.7 0.802726
Target:  5'- cCGAUCGCGuCGACG---UCGcCGGCGa -3'
miRNA:   3'- -GCUAGCGCuGUUGCcauAGCuGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.