miRNA display CGI


Results 81 - 100 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 41574 0.67 0.908248
Target:  5'- gCGAUCGCGuccgugaGCuAGCGGagAUCGuCGACu -3'
miRNA:   3'- -GCUAGCGC-------UG-UUGCCa-UAGCuGCUGc -5'
16296 3' -51.2 NC_004084.1 + 4205 0.67 0.908903
Target:  5'- aGAUC-CGACucgagccgcuGACGGUcggaAUCGACGAgGa -3'
miRNA:   3'- gCUAGcGCUG----------UUGCCA----UAGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 35229 0.67 0.908903
Target:  5'- aCGAUCGCGAuCGACG---UCGACcaccucuggGACGa -3'
miRNA:   3'- -GCUAGCGCU-GUUGCcauAGCUG---------CUGC- -5'
16296 3' -51.2 NC_004084.1 + 5470 0.67 0.915302
Target:  5'- aCGAUCaCGACGACGc---CGACGGCc -3'
miRNA:   3'- -GCUAGcGCUGUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 48876 0.67 0.915302
Target:  5'- cCGGggcUCGCGACGAUGca--CGACGGCa -3'
miRNA:   3'- -GCU---AGCGCUGUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 43680 0.67 0.915302
Target:  5'- cCGAgugccUGCGACgGACGGgcgcGUCGACGAa- -3'
miRNA:   3'- -GCUa----GCGCUG-UUGCCa---UAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 18103 0.67 0.921427
Target:  5'- aCGAUCGaugccagGACAGCGGUucgCGAUccgGAUGg -3'
miRNA:   3'- -GCUAGCg------CUGUUGCCAua-GCUG---CUGC- -5'
16296 3' -51.2 NC_004084.1 + 20040 0.67 0.921427
Target:  5'- aCGAUCGCGucucgucaguCGAUGcUGUCGAuacCGACGa -3'
miRNA:   3'- -GCUAGCGCu---------GUUGCcAUAGCU---GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 44354 0.68 0.888077
Target:  5'- uCGGUCGCgguGACAACGG---CGAgCGACa -3'
miRNA:   3'- -GCUAGCG---CUGUUGCCauaGCU-GCUGc -5'
16296 3' -51.2 NC_004084.1 + 17161 0.68 0.888077
Target:  5'- aCGAUCGcCGGCGACG---UCGAaGGCGa -3'
miRNA:   3'- -GCUAGC-GCUGUUGCcauAGCUgCUGC- -5'
16296 3' -51.2 NC_004084.1 + 23358 0.69 0.812225
Target:  5'- aCGAUgGCGACcgccugcCGGUAUCaGGCGAUc -3'
miRNA:   3'- -GCUAgCGCUGuu-----GCCAUAG-CUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 35370 0.69 0.821535
Target:  5'- aCGAUCGCGAaguGCGccaagaucacGUCGACGACc -3'
miRNA:   3'- -GCUAGCGCUgu-UGCca--------UAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 51454 0.69 0.830645
Target:  5'- gCGAgggcCGCGGCGGCuGUAcgggCGACGACc -3'
miRNA:   3'- -GCUa---GCGCUGUUGcCAUa---GCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 27293 0.69 0.830645
Target:  5'- aCGAUCGCGGCGcCGcUGUucaucauccUGGCGACGu -3'
miRNA:   3'- -GCUAGCGCUGUuGCcAUA---------GCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 7415 0.69 0.836898
Target:  5'- gCGAUCGaCGACGagggcgaugccgACGGUggcgagaccucggaGUCcGACGGCGa -3'
miRNA:   3'- -GCUAGC-GCUGU------------UGCCA--------------UAG-CUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 18454 0.69 0.845647
Target:  5'- aCGAaaucgaGCGAUGACccgcucgaguucgaGGUGUCGACGugGa -3'
miRNA:   3'- -GCUag----CGCUGUUG--------------CCAUAGCUGCugC- -5'
16296 3' -51.2 NC_004084.1 + 27804 0.68 0.856683
Target:  5'- uGAUCGCGAagggGAUGGacAUCGACcGCGg -3'
miRNA:   3'- gCUAGCGCUg---UUGCCa-UAGCUGcUGC- -5'
16296 3' -51.2 NC_004084.1 + 56241 0.68 0.87288
Target:  5'- aGAUcCGUGACGACucccgugcuGGUGUCGccuacgaguACGACGu -3'
miRNA:   3'- gCUA-GCGCUGUUG---------CCAUAGC---------UGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 44904 0.68 0.878315
Target:  5'- uGAUCccgGCGACGACccgcgccuagcugaGGUGaCGAUGACGu -3'
miRNA:   3'- gCUAG---CGCUGUUG--------------CCAUaGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 44805 0.68 0.880607
Target:  5'- aCGGUCcCGACcacccggucgguGACGGUAUCGAgcUGACc -3'
miRNA:   3'- -GCUAGcGCUG------------UUGCCAUAGCU--GCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.