miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16297 3' -54.6 NC_004084.1 + 7927 0.72 0.43372
Target:  5'- gUCGAucucCUCGGUCAGUUGCUCgUgCGGCg -3'
miRNA:   3'- -GGCU----GAGCUAGUCGACGAG-AgGCUGg -5'
16297 3' -54.6 NC_004084.1 + 13588 0.73 0.405772
Target:  5'- uCCGAcCUCGGUCAGCUcGauaccgUCaCCGACCg -3'
miRNA:   3'- -GGCU-GAGCUAGUCGA-Cg-----AGaGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 53729 0.75 0.328287
Target:  5'- gUCGGCUCGGUCcucgacgAGCUGCUCuaucuggucUCCGAUUc -3'
miRNA:   3'- -GGCUGAGCUAG-------UCGACGAG---------AGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 7235 0.75 0.306005
Target:  5'- gCCGACcucgaCGAUCGGCgcgUGCUCggCGACCg -3'
miRNA:   3'- -GGCUGa----GCUAGUCG---ACGAGagGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 53672 0.79 0.169154
Target:  5'- cCCGAuCUCGAUCAGCUGCucagUCUCCaaaucGGCUu -3'
miRNA:   3'- -GGCU-GAGCUAGUCGACG----AGAGG-----CUGG- -5'
16297 3' -54.6 NC_004084.1 + 23211 0.69 0.630712
Target:  5'- gUCGGCUCGAUCccgacgauucggAGgaGCUCgagCGGCCc -3'
miRNA:   3'- -GGCUGAGCUAG------------UCgaCGAGag-GCUGG- -5'
16297 3' -54.6 NC_004084.1 + 52924 0.69 0.652412
Target:  5'- aCGACUCG-UCGaCUGCgacgaUCUGGCCg -3'
miRNA:   3'- gGCUGAGCuAGUcGACGag---AGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 42732 0.68 0.663239
Target:  5'- gCGAgUUGAUCGGCUGCgagcgccacguUCUCCauuuCCu -3'
miRNA:   3'- gGCUgAGCUAGUCGACG-----------AGAGGcu--GG- -5'
16297 3' -54.6 NC_004084.1 + 8863 0.66 0.81628
Target:  5'- aCCG-CUCGAucUCAGCU-UUCgacacgCCGAUCa -3'
miRNA:   3'- -GGCuGAGCU--AGUCGAcGAGa-----GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 40347 0.66 0.805126
Target:  5'- cUCGAUgUUGAUCGGCcguuugucacggGCUCUCCGuuCg -3'
miRNA:   3'- -GGCUG-AGCUAGUCGa-----------CGAGAGGCugG- -5'
16297 3' -54.6 NC_004084.1 + 47422 0.66 0.797547
Target:  5'- gUCGGCUCcucGUCAGCcGCaUCUCCu-CCa -3'
miRNA:   3'- -GGCUGAGc--UAGUCGaCG-AGAGGcuGG- -5'
16297 3' -54.6 NC_004084.1 + 5404 0.67 0.768213
Target:  5'- uCCG-CUCGAUcCAGUaGgUCUCgUGGCCg -3'
miRNA:   3'- -GGCuGAGCUA-GUCGaCgAGAG-GCUGG- -5'
16297 3' -54.6 NC_004084.1 + 23117 0.67 0.767212
Target:  5'- gCCGACgaaCG-UCAGCagGCUCUcgcgcugacuucgCCGACUc -3'
miRNA:   3'- -GGCUGa--GCuAGUCGa-CGAGA-------------GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 26033 0.67 0.737653
Target:  5'- gCgGACUCGAUCgagcggAGCUGCUUgaagagaagCuCGAUCg -3'
miRNA:   3'- -GgCUGAGCUAG------UCGACGAGa--------G-GCUGG- -5'
16297 3' -54.6 NC_004084.1 + 53256 0.68 0.706163
Target:  5'- aUCGACUCGAgu-GCUGC-CUCaggGACg -3'
miRNA:   3'- -GGCUGAGCUaguCGACGaGAGg--CUGg -5'
16297 3' -54.6 NC_004084.1 + 5214 0.68 0.695511
Target:  5'- gCGACUCGA-CGuGCUGCUUccagUCgCGACg -3'
miRNA:   3'- gGCUGAGCUaGU-CGACGAG----AG-GCUGg -5'
16297 3' -54.6 NC_004084.1 + 29784 0.68 0.684799
Target:  5'- gCGACg-GGUCGGCguacacCUaCUCCGGCCg -3'
miRNA:   3'- gGCUGagCUAGUCGac----GA-GAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 41816 0.68 0.684799
Target:  5'- -aGAC-CGAUCAGCgcagcagucGCcgCUCCGACg -3'
miRNA:   3'- ggCUGaGCUAGUCGa--------CGa-GAGGCUGg -5'
16297 3' -54.6 NC_004084.1 + 12663 0.68 0.674038
Target:  5'- aUCGGCguccCGAUCgAGCggacugGUUCguagCCGACCa -3'
miRNA:   3'- -GGCUGa---GCUAG-UCGa-----CGAGa---GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 6392 0.68 0.674038
Target:  5'- aCCG-CUCGcUCAGcCUGCUCgagGGCCu -3'
miRNA:   3'- -GGCuGAGCuAGUC-GACGAGaggCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.