Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 12663 | 0.68 | 0.674038 |
Target: 5'- aUCGGCguccCGAUCgAGCggacugGUUCguagCCGACCa -3' miRNA: 3'- -GGCUGa---GCUAG-UCGa-----CGAGa---GGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 42732 | 0.68 | 0.663239 |
Target: 5'- gCGAgUUGAUCGGCUGCgagcgccacguUCUCCauuuCCu -3' miRNA: 3'- gGCUgAGCUAGUCGACG-----------AGAGGcu--GG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 52924 | 0.69 | 0.652412 |
Target: 5'- aCGACUCG-UCGaCUGCgacgaUCUGGCCg -3' miRNA: 3'- gGCUGAGCuAGUcGACGag---AGGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 23211 | 0.69 | 0.630712 |
Target: 5'- gUCGGCUCGAUCccgacgauucggAGgaGCUCgagCGGCCc -3' miRNA: 3'- -GGCUGAGCUAG------------UCgaCGAGag-GCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 1199 | 0.69 | 0.609017 |
Target: 5'- aCGGCUCGAUCcugaacgcuGGCUgGCUCggCGGCg -3' miRNA: 3'- gGCUGAGCUAG---------UCGA-CGAGagGCUGg -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 10753 | 0.69 | 0.598195 |
Target: 5'- uCCGGCUCGc-CAGUggggGCgUCgCCGACCu -3' miRNA: 3'- -GGCUGAGCuaGUCGa---CG-AGaGGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 33962 | 0.7 | 0.5874 |
Target: 5'- uCCGAUUCGucCAGCUGCUaUUCCcGCUa -3' miRNA: 3'- -GGCUGAGCuaGUCGACGA-GAGGcUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 26539 | 0.7 | 0.576641 |
Target: 5'- uCCGAUUC--UCAuGUaGCUCUCUGGCCu -3' miRNA: 3'- -GGCUGAGcuAGU-CGaCGAGAGGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 2724 | 0.71 | 0.534128 |
Target: 5'- gUGACUCGAcUCAGUgaacGUUgUCCGACUc -3' miRNA: 3'- gGCUGAGCU-AGUCGa---CGAgAGGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 40585 | 0.71 | 0.513283 |
Target: 5'- gCCGuCUCGAgcUCGGCU--UCUCgGACCu -3' miRNA: 3'- -GGCuGAGCU--AGUCGAcgAGAGgCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 27303 | 0.71 | 0.492778 |
Target: 5'- gCGGCUCGAcgAGCUGauaUUCGACCg -3' miRNA: 3'- gGCUGAGCUagUCGACgagAGGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 57884 | 0.71 | 0.491763 |
Target: 5'- gUCGACUCGAacCGGCgggcgaaccGCUCaucgaagUCCGACCg -3' miRNA: 3'- -GGCUGAGCUa-GUCGa--------CGAG-------AGGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 56870 | 0.72 | 0.443282 |
Target: 5'- uCCGGCUCGA-CGGCcgUGcCUCgguccagaCCGACCg -3' miRNA: 3'- -GGCUGAGCUaGUCG--AC-GAGa-------GGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 36820 | 0.72 | 0.43372 |
Target: 5'- cCCGAgaCGGUcCAGCUGCUCgCCGGu- -3' miRNA: 3'- -GGCUgaGCUA-GUCGACGAGaGGCUgg -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 7927 | 0.72 | 0.43372 |
Target: 5'- gUCGAucucCUCGGUCAGUUGCUCgUgCGGCg -3' miRNA: 3'- -GGCU----GAGCUAGUCGACGAG-AgGCUGg -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 13588 | 0.73 | 0.405772 |
Target: 5'- uCCGAcCUCGGUCAGCUcGauaccgUCaCCGACCg -3' miRNA: 3'- -GGCU-GAGCUAGUCGA-Cg-----AGaGGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 23483 | 0.73 | 0.394914 |
Target: 5'- -gGACUCGAUCAGCgagucguccacaGCUauggaUCCGAUCa -3' miRNA: 3'- ggCUGAGCUAGUCGa-----------CGAg----AGGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 3623 | 0.74 | 0.370322 |
Target: 5'- aCCGACUacgaggCGAUCGGCUGg-CUCaCGAUCg -3' miRNA: 3'- -GGCUGA------GCUAGUCGACgaGAG-GCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 53729 | 0.75 | 0.328287 |
Target: 5'- gUCGGCUCGGUCcucgacgAGCUGCUCuaucuggucUCCGAUUc -3' miRNA: 3'- -GGCUGAGCUAG-------UCGACGAG---------AGGCUGG- -5' |
|||||||
16297 | 3' | -54.6 | NC_004084.1 | + | 7235 | 0.75 | 0.306005 |
Target: 5'- gCCGACcucgaCGAUCGGCgcgUGCUCggCGACCg -3' miRNA: 3'- -GGCUGa----GCUAGUCG---ACGAGagGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home