Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 13123 | 0.66 | 0.787738 |
Target: 5'- cCugGAgUuGCGGGcCGUCGUCGUa- -3' miRNA: 3'- aGugCUgGcUGCCCaGUAGCAGCAgc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 2516 | 0.66 | 0.787738 |
Target: 5'- cCACuccuCCGGCGGaUCGUCGUCG-Ca -3' miRNA: 3'- aGUGcu--GGCUGCCcAGUAGCAGCaGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 50991 | 0.66 | 0.787738 |
Target: 5'- cUCGCcACCGuCGGcaUCGcccUCGUCGUCGa -3' miRNA: 3'- -AGUGcUGGCuGCCc-AGU---AGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 9415 | 0.66 | 0.803804 |
Target: 5'- gUCACGAUCGACacggaccgcgcgauGGG-CcgCGaCGUCGa -3' miRNA: 3'- -AGUGCUGGCUG--------------CCCaGuaGCaGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 2427 | 0.66 | 0.806589 |
Target: 5'- aCGCGAUCGugGGcGgugaAUCGacCGUCGa -3' miRNA: 3'- aGUGCUGGCugCC-Cag--UAGCa-GCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 28654 | 0.66 | 0.806589 |
Target: 5'- gUCGCGAUgcagGAC-GGUCAUCGUC-UCGc -3' miRNA: 3'- -AGUGCUGg---CUGcCCAGUAGCAGcAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 26190 | 0.66 | 0.806589 |
Target: 5'- -aACGACCGuCGGcGUCGUCGagGa-- -3' miRNA: 3'- agUGCUGGCuGCC-CAGUAGCagCagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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