Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 50865 | 0.68 | 0.685939 |
Target: 5'- --uCGGCCGACGGuUCAUCGgCGUa- -3' miRNA: 3'- aguGCUGGCUGCCcAGUAGCaGCAgc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 50991 | 0.66 | 0.787738 |
Target: 5'- cUCGCcACCGuCGGcaUCGcccUCGUCGUCGa -3' miRNA: 3'- -AGUGcUGGCuGCCc-AGU---AGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 52659 | 0.67 | 0.707024 |
Target: 5'- -uGCGGCgaGACGGag-AUCGUCGUCGa -3' miRNA: 3'- agUGCUGg-CUGCCcagUAGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 52944 | 0.67 | 0.707024 |
Target: 5'- gUCACGACCGGCGGcugggaGcUCGUCa -3' miRNA: 3'- -AGUGCUGGCUGCCcaguagC-AGCAGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 52944 | 0.7 | 0.537088 |
Target: 5'- aUCugG-CCGuCGGcGUCGUCGugaUCGUCGc -3' miRNA: 3'- -AGugCuGGCuGCC-CAGUAGC---AGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 54120 | 0.7 | 0.557996 |
Target: 5'- cCGCGAucaCCGGCGGGaCGUCGUggacuuugaggaUGUCGu -3' miRNA: 3'- aGUGCU---GGCUGCCCaGUAGCA------------GCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 58106 | 0.67 | 0.748276 |
Target: 5'- cCGCGcCCcugcuuCGGGUUcucgucggcgGUCGUCGUCGa -3' miRNA: 3'- aGUGCuGGcu----GCCCAG----------UAGCAGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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