miRNA display CGI

Results 41 - 47 of 47 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16298	3'	-55.2	NC_004084.1	+	17328	0.67	0.738104
	Target:  5'- cCGCGG-CGACGGcccgCAUCGucUCGUCGa -3' miRNA:   3'- aGUGCUgGCUGCCca--GUAGC--AGCAGC- -5'
16298	3'	-55.2	NC_004084.1	+	49665	0.67	0.727831
	Target:  5'- aC-CGGCUGAagcCGGGUgGUCcGUCGUCu -3' miRNA:   3'- aGuGCUGGCU---GCCCAgUAG-CAGCAGc -5'
16298	3'	-55.2	NC_004084.1	+	18696	0.67	0.707024
	Target:  5'- gUCAuccuCG-UCGACGGcGUCGUCGcCGUCa -3' miRNA:   3'- -AGU----GCuGGCUGCC-CAGUAGCaGCAGc -5'
16298	3'	-55.2	NC_004084.1	+	45852	0.68	0.696511
	Target:  5'- aUCGCuugcCCGucuucggugaACGGGaCGUCGUCGUCGc -3' miRNA:   3'- -AGUGcu--GGC----------UGCCCaGUAGCAGCAGC- -5'
16298	3'	-55.2	NC_004084.1	+	50132	0.68	0.696511
	Target:  5'- cCGCGAUCguccggauGACGaGGUCGUUGUCGagGa -3' miRNA:   3'- aGUGCUGG--------CUGC-CCAGUAGCAGCagC- -5'
16298	3'	-55.2	NC_004084.1	+	18976	0.68	0.685939
	Target:  5'- cCAguCGGCCGGCGGGgaaGUCGUagGUCc -3' miRNA:   3'- aGU--GCUGGCUGCCCag-UAGCAg-CAGc -5'
16298	3'	-55.2	NC_004084.1	+	26190	0.66	0.806589
	Target:  5'- -aACGACCGuCGGcGUCGUCGagGa-- -3' miRNA:   3'- agUGCUGGCuGCC-CAGUAGCagCagc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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