Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 26478 | 0.66 | 0.778077 |
Target: 5'- gCGCG-CCGGCGacguugaguguGGUCGUCGUCuUCc -3' miRNA: 3'- aGUGCuGGCUGC-----------CCAGUAGCAGcAGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 5236 | 0.7 | 0.537088 |
Target: 5'- gUCGCGACgGACgaacacgcugGGGUCAgucaUCGgccUCGUCGa -3' miRNA: 3'- -AGUGCUGgCUG----------CCCAGU----AGC---AGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 14264 | 0.71 | 0.516457 |
Target: 5'- cCGgGACCagGugGaGGUCcUCGUCGUCGc -3' miRNA: 3'- aGUgCUGG--CugC-CCAGuAGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 35404 | 1.1 | 0.001303 |
Target: 5'- aUCACGACCGACGGGUCAUCGUCGUCGa -3' miRNA: 3'- -AGUGCUGGCUGCCCAGUAGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 1171 | 0.68 | 0.65397 |
Target: 5'- uUCGCGucaucGCCGACGcGGUCGUggaCGUaGUCGc -3' miRNA: 3'- -AGUGC-----UGGCUGC-CCAGUA---GCAgCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 215 | 0.75 | 0.310478 |
Target: 5'- gCACGGCCaucGGCGGGggaGUCGUCGUUc -3' miRNA: 3'- aGUGCUGG---CUGCCCag-UAGCAGCAGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 14078 | 0.76 | 0.274836 |
Target: 5'- cCGCGACCGACGuagacGUCGaUGUCGUCGu -3' miRNA: 3'- aGUGCUGGCUGCc----CAGUaGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 52944 | 0.7 | 0.537088 |
Target: 5'- aUCugG-CCGuCGGcGUCGUCGugaUCGUCGc -3' miRNA: 3'- -AGugCuGGCuGCC-CAGUAGC---AGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 26190 | 0.66 | 0.806589 |
Target: 5'- -aACGACCGuCGGcGUCGUCGagGa-- -3' miRNA: 3'- agUGCUGGCuGCC-CAGUAGCagCagc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 12742 | 0.66 | 0.787738 |
Target: 5'- gCACGaucucgucgacGCCGAcCGucUCGUCGUUGUCGg -3' miRNA: 3'- aGUGC-----------UGGCU-GCccAGUAGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 13123 | 0.66 | 0.787738 |
Target: 5'- cCugGAgUuGCGGGcCGUCGUCGUa- -3' miRNA: 3'- aGugCUgGcUGCCCaGUAGCAGCAgc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 50991 | 0.66 | 0.787738 |
Target: 5'- cUCGCcACCGuCGGcaUCGcccUCGUCGUCGa -3' miRNA: 3'- -AGUGcUGGCuGCCc-AGU---AGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 21893 | 0.69 | 0.626114 |
Target: 5'- gUCGCGAUCGGCGucucGGUCGgccuccucaucgaguUCGaCGUCGa -3' miRNA: 3'- -AGUGCUGGCUGC----CCAGU---------------AGCaGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 41629 | 0.68 | 0.675318 |
Target: 5'- -gGCGACgGucCGGGaCAUCGaCGUCGa -3' miRNA: 3'- agUGCUGgCu-GCCCaGUAGCaGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 2516 | 0.66 | 0.787738 |
Target: 5'- cCACuccuCCGGCGGaUCGUCGUCG-Ca -3' miRNA: 3'- aGUGcu--GGCUGCCcAGUAGCAGCaGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 50865 | 0.68 | 0.685939 |
Target: 5'- --uCGGCCGACGGuUCAUCGgCGUa- -3' miRNA: 3'- aguGCUGGCUGCCcAGUAGCaGCAgc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 28654 | 0.66 | 0.806589 |
Target: 5'- gUCGCGAUgcagGAC-GGUCAUCGUC-UCGc -3' miRNA: 3'- -AGUGCUGg---CUGcCCAGUAGCAGcAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 2427 | 0.66 | 0.806589 |
Target: 5'- aCGCGAUCGugGGcGgugaAUCGacCGUCGa -3' miRNA: 3'- aGUGCUGGCugCC-Cag--UAGCa-GCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 9415 | 0.66 | 0.803804 |
Target: 5'- gUCACGAUCGACacggaccgcgcgauGGG-CcgCGaCGUCGa -3' miRNA: 3'- -AGUGCUGGCUG--------------CCCaGuaGCaGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 8131 | 0.66 | 0.778077 |
Target: 5'- -gAUGACCGACGccuGGUCGgcaGaCGUCGa -3' miRNA: 3'- agUGCUGGCUGC---CCAGUag-CaGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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