Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 50132 | 0.68 | 0.696511 |
Target: 5'- cCGCGAUCguccggauGACGaGGUCGUUGUCGagGa -3' miRNA: 3'- aGUGCUGG--------CUGC-CCAGUAGCAGCagC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 45852 | 0.68 | 0.696511 |
Target: 5'- aUCGCuugcCCGucuucggugaACGGGaCGUCGUCGUCGc -3' miRNA: 3'- -AGUGcu--GGC----------UGCCCaGUAGCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 18976 | 0.68 | 0.685939 |
Target: 5'- cCAguCGGCCGGCGGGgaaGUCGUagGUCc -3' miRNA: 3'- aGU--GCUGGCUGCCCag-UAGCAg-CAGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 50865 | 0.68 | 0.685939 |
Target: 5'- --uCGGCCGACGGuUCAUCGgCGUa- -3' miRNA: 3'- aguGCUGGCUGCCcAGUAGCaGCAgc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 42864 | 0.68 | 0.675318 |
Target: 5'- gCAuCGACCGACccGUCGaCGUCGUCc -3' miRNA: 3'- aGU-GCUGGCUGccCAGUaGCAGCAGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 11324 | 0.68 | 0.675318 |
Target: 5'- --cCGACCGGCGGGUUGUCGggauuagacaUCGcUCc -3' miRNA: 3'- aguGCUGGCUGCCCAGUAGC----------AGC-AGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 5112 | 0.68 | 0.675318 |
Target: 5'- cCGCGAUCGcCGGGUCAaCGUacUCGc -3' miRNA: 3'- aGUGCUGGCuGCCCAGUaGCAgcAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 16605 | 0.68 | 0.675318 |
Target: 5'- cUACGGacCCGGCGGGcUCcUCGagGUCGa -3' miRNA: 3'- aGUGCU--GGCUGCCC-AGuAGCagCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 41629 | 0.68 | 0.675318 |
Target: 5'- -gGCGACgGucCGGGaCAUCGaCGUCGa -3' miRNA: 3'- agUGCUGgCu-GCCCaGUAGCaGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 19646 | 0.68 | 0.664658 |
Target: 5'- -aGCGcCCGAa-GGUCGUCGUgCGUCa -3' miRNA: 3'- agUGCuGGCUgcCCAGUAGCA-GCAGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 43689 | 0.68 | 0.664658 |
Target: 5'- -uGCGACgGACGGG-CG-CGUCGaCGa -3' miRNA: 3'- agUGCUGgCUGCCCaGUaGCAGCaGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 1171 | 0.68 | 0.65397 |
Target: 5'- uUCGCGucaucGCCGACGcGGUCGUggaCGUaGUCGc -3' miRNA: 3'- -AGUGC-----UGGCUGC-CCAGUA---GCAgCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 46128 | 0.69 | 0.632545 |
Target: 5'- gUUACGAgCCGACuGGGUC-UCGUuCGcCGa -3' miRNA: 3'- -AGUGCU-GGCUG-CCCAGuAGCA-GCaGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 48991 | 0.69 | 0.632545 |
Target: 5'- gUCGCGGCCcaucGCGcGGUCcgUGUCGaUCGu -3' miRNA: 3'- -AGUGCUGGc---UGC-CCAGuaGCAGC-AGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 21893 | 0.69 | 0.626114 |
Target: 5'- gUCGCGAUCGGCGucucGGUCGgccuccucaucgaguUCGaCGUCGa -3' miRNA: 3'- -AGUGCUGGCUGC----CCAGU---------------AGCaGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 811 | 0.69 | 0.621827 |
Target: 5'- -gGCGAUCGugGaGGUCcUCGUCGa-- -3' miRNA: 3'- agUGCUGGCugC-CCAGuAGCAGCagc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 40629 | 0.69 | 0.58976 |
Target: 5'- uUCACGACUGAagaGGGcaaCGUCGaCGUCc -3' miRNA: 3'- -AGUGCUGGCUg--CCCa--GUAGCaGCAGc -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 46270 | 0.7 | 0.575946 |
Target: 5'- -uGCGACauccaucgcuucguCGACGGaGUCGUaGUCGUCGa -3' miRNA: 3'- agUGCUG--------------GCUGCC-CAGUAgCAGCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 54120 | 0.7 | 0.557996 |
Target: 5'- cCGCGAucaCCGGCGGGaCGUCGUggacuuugaggaUGUCGu -3' miRNA: 3'- aGUGCU---GGCUGCCCaGUAGCA------------GCAGC- -5' |
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16298 | 3' | -55.2 | NC_004084.1 | + | 3019 | 0.7 | 0.551697 |
Target: 5'- aUCAUG-CCGAguaugucggcgauacCGGGaucaaUCAUCGUCGUCa -3' miRNA: 3'- -AGUGCuGGCU---------------GCCC-----AGUAGCAGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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