miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16298 5' -58.3 NC_004084.1 + 19108 0.66 0.64361
Target:  5'- cCGCGgcGGCuACCGuguGGACUCGuUCGa -3'
miRNA:   3'- -GCGCuaCCGcUGGU---CCUGAGCcAGCc -5'
16298 5' -58.3 NC_004084.1 + 7887 0.66 0.642556
Target:  5'- gGCGAagcUGcucGCGAUCGGGGCUCucgacguuccacgGGUCGa -3'
miRNA:   3'- gCGCU---AC---CGCUGGUCCUGAG-------------CCAGCc -5'
16298 5' -58.3 NC_004084.1 + 5142 0.66 0.632007
Target:  5'- gGCG-UGGCGACCgacgucgucccugAGGcagcACUCGaGUCGa -3'
miRNA:   3'- gCGCuACCGCUGG-------------UCC----UGAGC-CAGCc -5'
16298 5' -58.3 NC_004084.1 + 11930 0.66 0.622513
Target:  5'- gGCGAcgucGCGACCagcgAGGACUCGaUCGa -3'
miRNA:   3'- gCGCUac--CGCUGG----UCCUGAGCcAGCc -5'
16298 5' -58.3 NC_004084.1 + 41330 0.66 0.622513
Target:  5'- aGCGcgGGUGAgaaUGGGAgUCGGUCu- -3'
miRNA:   3'- gCGCuaCCGCUg--GUCCUgAGCCAGcc -5'
16298 5' -58.3 NC_004084.1 + 6873 0.66 0.595143
Target:  5'- gCGuUGAUGGCuGGCCAcgacgcgaucgaaauGGcGCUCGaGUCGGa -3'
miRNA:   3'- -GC-GCUACCG-CUGGU---------------CC-UGAGC-CAGCC- -5'
16298 5' -58.3 NC_004084.1 + 21888 0.67 0.580477
Target:  5'- cCGUuGUcGCGAUCGGcGuCUCGGUCGGc -3'
miRNA:   3'- -GCGcUAcCGCUGGUC-CuGAGCCAGCC- -5'
16298 5' -58.3 NC_004084.1 + 39547 0.67 0.574213
Target:  5'- uCGUGAUGGCcagcgcgaucgacucGACCGGGAC-C-GUCGa -3'
miRNA:   3'- -GCGCUACCG---------------CUGGUCCUGaGcCAGCc -5'
16298 5' -58.3 NC_004084.1 + 47592 0.67 0.566926
Target:  5'- gCGCGGUGGCGACUcucacaagaucucgAGG---UGGUCGa -3'
miRNA:   3'- -GCGCUACCGCUGG--------------UCCugaGCCAGCc -5'
16298 5' -58.3 NC_004084.1 + 5135 0.67 0.549333
Target:  5'- uCGCGGcUGGUcGCCAGGACgUCGccCGGc -3'
miRNA:   3'- -GCGCU-ACCGcUGGUCCUG-AGCcaGCC- -5'
16298 5' -58.3 NC_004084.1 + 48904 0.68 0.508674
Target:  5'- cCGuCGGUcGGuCGGCCAcGACUucCGGUCGGc -3'
miRNA:   3'- -GC-GCUA-CC-GCUGGUcCUGA--GCCAGCC- -5'
16298 5' -58.3 NC_004084.1 + 42735 0.68 0.508674
Target:  5'- uCGCGAgcaGGCGaaggacaucgGCCcGGAgaUGGUCGGg -3'
miRNA:   3'- -GCGCUa--CCGC----------UGGuCCUgaGCCAGCC- -5'
16298 5' -58.3 NC_004084.1 + 5344 0.68 0.48882
Target:  5'- uCGcCGAgcgGGCGGCgAGGACUgGGaCGa -3'
miRNA:   3'- -GC-GCUa--CCGCUGgUCCUGAgCCaGCc -5'
16298 5' -58.3 NC_004084.1 + 26099 0.68 0.48882
Target:  5'- uGCGcUGG-GAUCAGGACguuccCGGUCGc -3'
miRNA:   3'- gCGCuACCgCUGGUCCUGa----GCCAGCc -5'
16298 5' -58.3 NC_004084.1 + 3615 0.68 0.47903
Target:  5'- uCGCGggGGCGucAUCGGGACUaUGGagGGc -3'
miRNA:   3'- -GCGCuaCCGC--UGGUCCUGA-GCCagCC- -5'
16298 5' -58.3 NC_004084.1 + 38382 0.68 0.469337
Target:  5'- gCGCGGgaaGGCGACCgAGGACcaaccguaCGGccUCGGc -3'
miRNA:   3'- -GCGCUa--CCGCUGG-UCCUGa-------GCC--AGCC- -5'
16298 5' -58.3 NC_004084.1 + 16916 0.68 0.469337
Target:  5'- gGCGAUcGUGGCCGGGug-CGGUuCGGc -3'
miRNA:   3'- gCGCUAcCGCUGGUCCugaGCCA-GCC- -5'
16298 5' -58.3 NC_004084.1 + 41623 0.69 0.422465
Target:  5'- aCGCGA-GGCGAcgguCCGGGACaUCGacGUCGa -3'
miRNA:   3'- -GCGCUaCCGCU----GGUCCUG-AGC--CAGCc -5'
16298 5' -58.3 NC_004084.1 + 31345 0.69 0.410744
Target:  5'- uCGCGAUGGCGGUCGgaaaguucguugcuGGACU-GGUCGa -3'
miRNA:   3'- -GCGCUACCGCUGGU--------------CCUGAgCCAGCc -5'
16298 5' -58.3 NC_004084.1 + 53301 0.7 0.393983
Target:  5'- cCGCGAguacguugacccGGCGAUCGcGGGCUCGGUUc- -3'
miRNA:   3'- -GCGCUa-----------CCGCUGGU-CCUGAGCCAGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.