Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16298 | 5' | -58.3 | NC_004084.1 | + | 41623 | 0.69 | 0.422465 |
Target: 5'- aCGCGA-GGCGAcgguCCGGGACaUCGacGUCGa -3' miRNA: 3'- -GCGCUaCCGCU----GGUCCUG-AGC--CAGCc -5' |
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16298 | 5' | -58.3 | NC_004084.1 | + | 42735 | 0.68 | 0.508674 |
Target: 5'- uCGCGAgcaGGCGaaggacaucgGCCcGGAgaUGGUCGGg -3' miRNA: 3'- -GCGCUa--CCGC----------UGGuCCUgaGCCAGCC- -5' |
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16298 | 5' | -58.3 | NC_004084.1 | + | 47592 | 0.67 | 0.566926 |
Target: 5'- gCGCGGUGGCGACUcucacaagaucucgAGG---UGGUCGa -3' miRNA: 3'- -GCGCUACCGCUGG--------------UCCugaGCCAGCc -5' |
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16298 | 5' | -58.3 | NC_004084.1 | + | 48904 | 0.68 | 0.508674 |
Target: 5'- cCGuCGGUcGGuCGGCCAcGACUucCGGUCGGc -3' miRNA: 3'- -GC-GCUA-CC-GCUGGUcCUGA--GCCAGCC- -5' |
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16298 | 5' | -58.3 | NC_004084.1 | + | 53301 | 0.7 | 0.393983 |
Target: 5'- cCGCGAguacguugacccGGCGAUCGcGGGCUCGGUUc- -3' miRNA: 3'- -GCGCUa-----------CCGCUGGU-CCUGAGCCAGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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