Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16299 | 3' | -52.3 | NC_004084.1 | + | 22154 | 0.71 | 0.555705 |
Target: 5'- ---aCCgCGAGCGCCUCGGCGcACu- -3' miRNA: 3'- uauaGGaGCUUGCGGAGUCGCaUGuc -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 4510 | 0.66 | 0.835049 |
Target: 5'- gAUGUCga-GAuCGCCUCGcagcGCGUGCAGg -3' miRNA: 3'- -UAUAGgagCUuGCGGAGU----CGCAUGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 9930 | 0.66 | 0.835049 |
Target: 5'- ---gCCUCGAcgaGCCUCAGCGa---- -3' miRNA: 3'- uauaGGAGCUug-CGGAGUCGCauguc -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 21443 | 0.67 | 0.795869 |
Target: 5'- gAUGUCCgCGAGCGCCUCGaacggacGCuGaACAGu -3' miRNA: 3'- -UAUAGGaGCUUGCGGAGU-------CG-CaUGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 32227 | 0.68 | 0.7344 |
Target: 5'- --cUCCUCGAcgACGCCgaCGGuCGUugGGa -3' miRNA: 3'- uauAGGAGCU--UGCGGa-GUC-GCAugUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 44544 | 0.69 | 0.723539 |
Target: 5'- -gGUCCUCGGcugcuggugccaGCGCCUCAaCGaugACGGg -3' miRNA: 3'- uaUAGGAGCU------------UGCGGAGUcGCa--UGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 48695 | 0.71 | 0.600385 |
Target: 5'- -gAUCCUCGAAgcCGCCggcaUCGGCGU-CGGc -3' miRNA: 3'- uaUAGGAGCUU--GCGG----AGUCGCAuGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 20037 | 0.72 | 0.519588 |
Target: 5'- -gGUCCUCGGuCGCCUucccgcgcucgaucCGGCGUagGCAGa -3' miRNA: 3'- uaUAGGAGCUuGCGGA--------------GUCGCA--UGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 47013 | 0.7 | 0.611649 |
Target: 5'- --cUCCUCGuGGCG-CUCAGCGUGguGg -3' miRNA: 3'- uauAGGAGC-UUGCgGAGUCGCAUguC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 14563 | 0.7 | 0.622932 |
Target: 5'- -gAUCC-CGAACuCCUCAGCGgcgucGCGGa -3' miRNA: 3'- uaUAGGaGCUUGcGGAGUCGCa----UGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 7008 | 0.69 | 0.679261 |
Target: 5'- ---cCCUCGAAgGCCUCgacGGCGU-CGGc -3' miRNA: 3'- uauaGGAGCUUgCGGAG---UCGCAuGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 15256 | 0.69 | 0.712582 |
Target: 5'- --cUCCgUGAACGCgaaCUCAGCGUACu- -3' miRNA: 3'- uauAGGaGCUUGCG---GAGUCGCAUGuc -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 2744 | 0.68 | 0.740865 |
Target: 5'- uUGUCCgacucgcucucggCGAugGCCUUcgucuccuGCGUGCAGa -3' miRNA: 3'- uAUAGGa------------GCUugCGGAGu-------CGCAUGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 36258 | 0.68 | 0.745153 |
Target: 5'- -cGUCCUCGAguGCGCCgaGGCGcucGCGGu -3' miRNA: 3'- uaUAGGAGCU--UGCGGagUCGCa--UGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 2217 | 0.68 | 0.766285 |
Target: 5'- gAUGUCCUCGccgcuCGCUUCGGCcagcGCGGa -3' miRNA: 3'- -UAUAGGAGCuu---GCGGAGUCGca--UGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 138 | 0.68 | 0.776639 |
Target: 5'- -cGUCCgcaGAGCGCCcgCAGCcaggGCAGg -3' miRNA: 3'- uaUAGGag-CUUGCGGa-GUCGca--UGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 49209 | 0.67 | 0.786836 |
Target: 5'- ---aCC-CGAACGCCUUcGCGUcgaACGGg -3' miRNA: 3'- uauaGGaGCUUGCGGAGuCGCA---UGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 43405 | 0.67 | 0.816364 |
Target: 5'- -gGUUCUCGAA-GCCccCAGCGaACAGa -3' miRNA: 3'- uaUAGGAGCUUgCGGa-GUCGCaUGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 3932 | 0.66 | 0.84406 |
Target: 5'- -cGUCCUCGAACcgGCUUUugaaGUGCAGg -3' miRNA: 3'- uaUAGGAGCUUG--CGGAGucg-CAUGUC- -5' |
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16299 | 3' | -52.3 | NC_004084.1 | + | 35099 | 1.07 | 0.002769 |
Target: 5'- gAUAUCCUCGAACGCCUCAGCGUACAGu -3' miRNA: 3'- -UAUAGGAGCUUGCGGAGUCGCAUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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