miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 3' -57.7 NC_001347.2 + 139103 0.66 0.902788
Target:  5'- cGGAUuUCGGCGUcucuGUGCGCACGccuGUGCu -3'
miRNA:   3'- -UUUAuGGCCGCG----UACGCGUGC---CGCGu -5'
1630 3' -57.7 NC_001347.2 + 125831 0.66 0.902788
Target:  5'- ---gGCCaGCuGCAUcGUGC-CGGCGCGa -3'
miRNA:   3'- uuuaUGGcCG-CGUA-CGCGuGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 40474 0.66 0.902788
Target:  5'- --cUGCCGGUGCGUGuCGUcccACGGUa-- -3'
miRNA:   3'- uuuAUGGCCGCGUAC-GCG---UGCCGcgu -5'
1630 3' -57.7 NC_001347.2 + 196953 0.66 0.900926
Target:  5'- ---cGCCGGgGCugucgcGCGCcgccgacgcccgagACGGCGCGc -3'
miRNA:   3'- uuuaUGGCCgCGua----CGCG--------------UGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 170370 0.66 0.900926
Target:  5'- ---aGCCGGCGCGggagcUGCcguccgacaggaacGCGCuguGGCGCGa -3'
miRNA:   3'- uuuaUGGCCGCGU-----ACG--------------CGUG---CCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 166702 0.66 0.896504
Target:  5'- --cUGCCGGCGCugcUGCGCAUcaCGUc -3'
miRNA:   3'- uuuAUGGCCGCGu--ACGCGUGccGCGu -5'
1630 3' -57.7 NC_001347.2 + 109470 0.66 0.896504
Target:  5'- ---cACCGGCgGCG-GCGCcAUGGCGg- -3'
miRNA:   3'- uuuaUGGCCG-CGUaCGCG-UGCCGCgu -5'
1630 3' -57.7 NC_001347.2 + 77306 0.66 0.896504
Target:  5'- -cGUACUugGGCGUggGC-CGCGGCGUg -3'
miRNA:   3'- uuUAUGG--CCGCGuaCGcGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 201813 0.66 0.889999
Target:  5'- ---gGCCGGCuGCAUGCacaucCACGcguucGCGCAg -3'
miRNA:   3'- uuuaUGGCCG-CGUACGc----GUGC-----CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 136385 0.66 0.889999
Target:  5'- --uUACCGaCGCAUGCGCACugacCGCc -3'
miRNA:   3'- uuuAUGGCcGCGUACGCGUGcc--GCGu -5'
1630 3' -57.7 NC_001347.2 + 85942 0.66 0.889999
Target:  5'- uGGAUGcCCGGCGaga-CGC-CGGCGCGc -3'
miRNA:   3'- -UUUAU-GGCCGCguacGCGuGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 115511 0.66 0.889999
Target:  5'- ---aACCGGUGCcgGcCGCGCuagcgGGCuGCAg -3'
miRNA:   3'- uuuaUGGCCGCGuaC-GCGUG-----CCG-CGU- -5'
1630 3' -57.7 NC_001347.2 + 77873 0.66 0.889999
Target:  5'- ---gGCCGaGCGCcuggGCGC-CGuGCGCGu -3'
miRNA:   3'- uuuaUGGC-CGCGua--CGCGuGC-CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 82391 0.66 0.883276
Target:  5'- ---cACCGGCGUgaagGUGCGCGCcaacaCGCGg -3'
miRNA:   3'- uuuaUGGCCGCG----UACGCGUGcc---GCGU- -5'
1630 3' -57.7 NC_001347.2 + 100880 0.66 0.883276
Target:  5'- ---gGCgCGGCGCA-GCGC-CGGC-CAu -3'
miRNA:   3'- uuuaUG-GCCGCGUaCGCGuGCCGcGU- -5'
1630 3' -57.7 NC_001347.2 + 142435 0.66 0.883276
Target:  5'- ----gUCGGCGCG-GCGUcCGGCGUc -3'
miRNA:   3'- uuuauGGCCGCGUaCGCGuGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 151350 0.66 0.87634
Target:  5'- --cUGgUGGCGCGUGgGCccagccUGGCGCAc -3'
miRNA:   3'- uuuAUgGCCGCGUACgCGu-----GCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 194638 0.66 0.87634
Target:  5'- -cGUGCCGGaCGCAaa--CACGGCGCc -3'
miRNA:   3'- uuUAUGGCC-GCGUacgcGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 128437 0.66 0.87634
Target:  5'- -----aCGGCGCcugcUGCGUggccgucaaGCGGCGCGa -3'
miRNA:   3'- uuuaugGCCGCGu---ACGCG---------UGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 88251 0.66 0.87634
Target:  5'- ---cGCCGGUGaagagaGCGCGGCGUAc -3'
miRNA:   3'- uuuaUGGCCGCguacg-CGUGCCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.