Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1630 | 3' | -57.7 | NC_001347.2 | + | 88251 | 0.66 | 0.87634 |
Target: 5'- ---cGCCGGUGaagagaGCGCGGCGUAc -3' miRNA: 3'- uuuaUGGCCGCguacg-CGUGCCGCGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 201813 | 0.66 | 0.889999 |
Target: 5'- ---gGCCGGCuGCAUGCacaucCACGcguucGCGCAg -3' miRNA: 3'- uuuaUGGCCG-CGUACGc----GUGC-----CGCGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 82391 | 0.66 | 0.883276 |
Target: 5'- ---cACCGGCGUgaagGUGCGCGCcaacaCGCGg -3' miRNA: 3'- uuuaUGGCCGCG----UACGCGUGcc---GCGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 100880 | 0.66 | 0.883276 |
Target: 5'- ---gGCgCGGCGCA-GCGC-CGGC-CAu -3' miRNA: 3'- uuuaUG-GCCGCGUaCGCGuGCCGcGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 142435 | 0.66 | 0.883276 |
Target: 5'- ----gUCGGCGCG-GCGUcCGGCGUc -3' miRNA: 3'- uuuauGGCCGCGUaCGCGuGCCGCGu -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 99294 | 0.66 | 0.87634 |
Target: 5'- cGAcgGCaCGGCGCGUaacGCuGCACGGCuaGa -3' miRNA: 3'- -UUuaUG-GCCGCGUA---CG-CGUGCCGcgU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 128437 | 0.66 | 0.87634 |
Target: 5'- -----aCGGCGCcugcUGCGUggccgucaaGCGGCGCGa -3' miRNA: 3'- uuuaugGCCGCGu---ACGCG---------UGCCGCGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 194638 | 0.66 | 0.87634 |
Target: 5'- -cGUGCCGGaCGCAaa--CACGGCGCc -3' miRNA: 3'- uuUAUGGCC-GCGUacgcGUGCCGCGu -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 151350 | 0.66 | 0.87634 |
Target: 5'- --cUGgUGGCGCGUGgGCccagccUGGCGCAc -3' miRNA: 3'- uuuAUgGCCGCGUACgCGu-----GCCGCGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 136385 | 0.66 | 0.889999 |
Target: 5'- --uUACCGaCGCAUGCGCACugacCGCc -3' miRNA: 3'- uuuAUGGCcGCGUACGCGUGcc--GCGu -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 85942 | 0.66 | 0.889999 |
Target: 5'- uGGAUGcCCGGCGaga-CGC-CGGCGCGc -3' miRNA: 3'- -UUUAU-GGCCGCguacGCGuGCCGCGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 115511 | 0.66 | 0.889999 |
Target: 5'- ---aACCGGUGCcgGcCGCGCuagcgGGCuGCAg -3' miRNA: 3'- uuuaUGGCCGCGuaC-GCGUG-----CCG-CGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 125831 | 0.66 | 0.902788 |
Target: 5'- ---gGCCaGCuGCAUcGUGC-CGGCGCGa -3' miRNA: 3'- uuuaUGGcCG-CGUA-CGCGuGCCGCGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 40474 | 0.66 | 0.902788 |
Target: 5'- --cUGCCGGUGCGUGuCGUcccACGGUa-- -3' miRNA: 3'- uuuAUGGCCGCGUAC-GCG---UGCCGcgu -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 196953 | 0.66 | 0.900926 |
Target: 5'- ---cGCCGGgGCugucgcGCGCcgccgacgcccgagACGGCGCGc -3' miRNA: 3'- uuuaUGGCCgCGua----CGCG--------------UGCCGCGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 170370 | 0.66 | 0.900926 |
Target: 5'- ---aGCCGGCGCGggagcUGCcguccgacaggaacGCGCuguGGCGCGa -3' miRNA: 3'- uuuaUGGCCGCGU-----ACG--------------CGUG---CCGCGU- -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 77306 | 0.66 | 0.896504 |
Target: 5'- -cGUACUugGGCGUggGC-CGCGGCGUg -3' miRNA: 3'- uuUAUGG--CCGCGuaCGcGUGCCGCGu -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 109470 | 0.66 | 0.896504 |
Target: 5'- ---cACCGGCgGCG-GCGCcAUGGCGg- -3' miRNA: 3'- uuuaUGGCCG-CGUaCGCG-UGCCGCgu -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 166702 | 0.66 | 0.896504 |
Target: 5'- --cUGCCGGCGCugcUGCGCAUcaCGUc -3' miRNA: 3'- uuuAUGGCCGCGu--ACGCGUGccGCGu -5' |
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1630 | 3' | -57.7 | NC_001347.2 | + | 77873 | 0.66 | 0.889999 |
Target: 5'- ---gGCCGaGCGCcuggGCGC-CGuGCGCGu -3' miRNA: 3'- uuuaUGGC-CGCGua--CGCGuGC-CGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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