miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 3' -57.7 NC_001347.2 + 170370 0.66 0.900926
Target:  5'- ---aGCCGGCGCGggagcUGCcguccgacaggaacGCGCuguGGCGCGa -3'
miRNA:   3'- uuuaUGGCCGCGU-----ACG--------------CGUG---CCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 77306 0.66 0.896504
Target:  5'- -cGUACUugGGCGUggGC-CGCGGCGUg -3'
miRNA:   3'- uuUAUGG--CCGCGuaCGcGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 109470 0.66 0.896504
Target:  5'- ---cACCGGCgGCG-GCGCcAUGGCGg- -3'
miRNA:   3'- uuuaUGGCCG-CGUaCGCG-UGCCGCgu -5'
1630 3' -57.7 NC_001347.2 + 166702 0.66 0.896504
Target:  5'- --cUGCCGGCGCugcUGCGCAUcaCGUc -3'
miRNA:   3'- uuuAUGGCCGCGu--ACGCGUGccGCGu -5'
1630 3' -57.7 NC_001347.2 + 201813 0.66 0.889999
Target:  5'- ---gGCCGGCuGCAUGCacaucCACGcguucGCGCAg -3'
miRNA:   3'- uuuaUGGCCG-CGUACGc----GUGC-----CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 136385 0.66 0.889999
Target:  5'- --uUACCGaCGCAUGCGCACugacCGCc -3'
miRNA:   3'- uuuAUGGCcGCGUACGCGUGcc--GCGu -5'
1630 3' -57.7 NC_001347.2 + 85942 0.66 0.889999
Target:  5'- uGGAUGcCCGGCGaga-CGC-CGGCGCGc -3'
miRNA:   3'- -UUUAU-GGCCGCguacGCGuGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 115511 0.66 0.889999
Target:  5'- ---aACCGGUGCcgGcCGCGCuagcgGGCuGCAg -3'
miRNA:   3'- uuuaUGGCCGCGuaC-GCGUG-----CCG-CGU- -5'
1630 3' -57.7 NC_001347.2 + 77873 0.66 0.889999
Target:  5'- ---gGCCGaGCGCcuggGCGC-CGuGCGCGu -3'
miRNA:   3'- uuuaUGGC-CGCGua--CGCGuGC-CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 193585 0.67 0.822241
Target:  5'- ----cCCGGUGCAcgaauccaucUGCGCGCGuuGCAa -3'
miRNA:   3'- uuuauGGCCGCGU----------ACGCGUGCcgCGU- -5'
1630 3' -57.7 NC_001347.2 + 178386 0.67 0.822241
Target:  5'- ----cCUGGCGCcca-GCAUGGCGCAg -3'
miRNA:   3'- uuuauGGCCGCGuacgCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 38362 0.67 0.822241
Target:  5'- -----aCGGCucccGCuaucGCGCACGGCGCGu -3'
miRNA:   3'- uuuaugGCCG----CGua--CGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 141816 0.67 0.846556
Target:  5'- -cGUGCCGGCGCccAUGgcCGCcacugUGGCGCGu -3'
miRNA:   3'- uuUAUGGCCGCG--UAC--GCGu----GCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 22494 0.67 0.861845
Target:  5'- ---cACCGGCaucacCGUGUGCACGG-GCu -3'
miRNA:   3'- uuuaUGGCCGc----GUACGCGUGCCgCGu -5'
1630 3' -57.7 NC_001347.2 + 1557 0.67 0.85734
Target:  5'- --cUAgCGGCGCGcgacGCggacgagugguuucgGCACGGCGCGg -3'
miRNA:   3'- uuuAUgGCCGCGUa---CG---------------CGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 126641 0.67 0.854297
Target:  5'- ---cGCaCGGCGC-UG-GCACGcGCGCGg -3'
miRNA:   3'- uuuaUG-GCCGCGuACgCGUGC-CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 154781 0.67 0.853532
Target:  5'- cAGAUGCUgaugauGGCGCAUagguuacaGCGCgugucgauggccaGCGGCGCGc -3'
miRNA:   3'- -UUUAUGG------CCGCGUA--------CGCG-------------UGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 18811 0.68 0.813795
Target:  5'- -cGUGCU-GCGC-UG-GCACGGCGCAc -3'
miRNA:   3'- uuUAUGGcCGCGuACgCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 174830 0.68 0.813795
Target:  5'- --cUugUGGCGCcUGUGCAUGaaGCGCGa -3'
miRNA:   3'- uuuAugGCCGCGuACGCGUGC--CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 77434 0.68 0.80519
Target:  5'- cAGGUGCUGcGCGaccCGUGCGUGCuGCGCAa -3'
miRNA:   3'- -UUUAUGGC-CGC---GUACGCGUGcCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.