miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 3' -57.7 NC_001347.2 + 136344 1.06 0.004301
Target:  5'- aAAAUACCGGCGCAUGCGCACGGCGCAc -3'
miRNA:   3'- -UUUAUGGCCGCGUACGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 136459 0.87 0.076438
Target:  5'- --uUACCGGCGCAUGCGCAgGGCGa- -3'
miRNA:   3'- uuuAUGGCCGCGUACGCGUgCCGCgu -5'
1630 3' -57.7 NC_001347.2 + 137460 0.81 0.181907
Target:  5'- --cUACCGcGCGCGUGCGUGCGcGCGCGu -3'
miRNA:   3'- uuuAUGGC-CGCGUACGCGUGC-CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 136420 0.79 0.248815
Target:  5'- aAAAUACUGGCGCAUGCGCACGaCaCAc -3'
miRNA:   3'- -UUUAUGGCCGCGUACGCGUGCcGcGU- -5'
1630 3' -57.7 NC_001347.2 + 126670 0.79 0.260754
Target:  5'- cGAGUACCGGCGCGUGguggcuuacgaCGCugacGCGGCGCc -3'
miRNA:   3'- -UUUAUGGCCGCGUAC-----------GCG----UGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 157260 0.76 0.381266
Target:  5'- ---cACCGGCGCA-GUuuGCGGCGCAg -3'
miRNA:   3'- uuuaUGGCCGCGUaCGcgUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 1912 0.75 0.406052
Target:  5'- ---gGCUGGCGC-UGgGCGCGGUGCu -3'
miRNA:   3'- uuuaUGGCCGCGuACgCGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 1181 0.75 0.431826
Target:  5'- gGAAUACCaggccaugGGCGCcgugugGCGCGCGGCGUu -3'
miRNA:   3'- -UUUAUGG--------CCGCGua----CGCGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 176627 0.73 0.504897
Target:  5'- ----cCCGGCcCAgacgGUGCACGGCGCGg -3'
miRNA:   3'- uuuauGGCCGcGUa---CGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 128858 0.73 0.514416
Target:  5'- ---cGCCGcGCcCGUcGCGCACGGCGCu -3'
miRNA:   3'- uuuaUGGC-CGcGUA-CGCGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 173975 0.73 0.533667
Target:  5'- ---cGCgGGcCGCGUgccugggaacgcGCGCACGGCGCGg -3'
miRNA:   3'- uuuaUGgCC-GCGUA------------CGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 191242 0.72 0.543389
Target:  5'- ----cCCGGCGuCGUGaaagGCACGGCGUAa -3'
miRNA:   3'- uuuauGGCCGC-GUACg---CGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 195897 0.72 0.576838
Target:  5'- ---cGCCGGCGCuuuccgccgucugGUGCACgaGGCGCAg -3'
miRNA:   3'- uuuaUGGCCGCGua-----------CGCGUG--CCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 78674 0.72 0.582793
Target:  5'- ---gGCCGuGCGCAagGCGCgcgacGCGGCGCc -3'
miRNA:   3'- uuuaUGGC-CGCGUa-CGCG-----UGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 2359 0.71 0.602724
Target:  5'- -cGUGCUgGGCGCGcugGCGCugGGaCGCGa -3'
miRNA:   3'- uuUAUGG-CCGCGUa--CGCGugCC-GCGU- -5'
1630 3' -57.7 NC_001347.2 + 39686 0.71 0.612723
Target:  5'- -cGUGCaCGGCGCGUGCugGCGCcgccuuGGCGCc -3'
miRNA:   3'- uuUAUG-GCCGCGUACG--CGUG------CCGCGu -5'
1630 3' -57.7 NC_001347.2 + 151091 0.71 0.652791
Target:  5'- ---cAUCGGuCGCGacaugcuagaGCGCACGGCGCGg -3'
miRNA:   3'- uuuaUGGCC-GCGUa---------CGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 116650 0.71 0.652791
Target:  5'- --uUGCUGaGCuGCAUGaGCACGGCGCc -3'
miRNA:   3'- uuuAUGGC-CG-CGUACgCGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 81491 0.7 0.662787
Target:  5'- ---cGCuCGGCGgGUGCGCAccgcCGGUGCu -3'
miRNA:   3'- uuuaUG-GCCGCgUACGCGU----GCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 150600 0.7 0.679722
Target:  5'- uAGUGgCGGCGUcgGCGUuuccaacgacaaucACGGCGCc -3'
miRNA:   3'- uUUAUgGCCGCGuaCGCG--------------UGCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.