miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 3' -57.7 NC_001347.2 + 39152 0.7 0.691614
Target:  5'- -cGUGCCcGCGuCGcgcugcgaccacuUGCGCAUGGCGCGg -3'
miRNA:   3'- uuUAUGGcCGC-GU-------------ACGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 93417 0.7 0.692602
Target:  5'- uAGUACa-GCGUAgaucucgucGCGCACGGCGCGa -3'
miRNA:   3'- uUUAUGgcCGCGUa--------CGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 198366 0.7 0.692602
Target:  5'- uGAGUuuCUGGCGCAggugggugGCGCGCGggucGCGCAa -3'
miRNA:   3'- -UUUAu-GGCCGCGUa-------CGCGUGC----CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 181742 0.7 0.702455
Target:  5'- ---gACCGcUGCGUGCGCcgACGGCGUu -3'
miRNA:   3'- uuuaUGGCcGCGUACGCG--UGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 136635 0.7 0.702455
Target:  5'- ----cCCGacuGCGCAUGCGCACGGaaaCGCc -3'
miRNA:   3'- uuuauGGC---CGCGUACGCGUGCC---GCGu -5'
1630 3' -57.7 NC_001347.2 + 37919 0.7 0.702455
Target:  5'- ---gGCuCGGCGCccacaGCGCGGCGCGc -3'
miRNA:   3'- uuuaUG-GCCGCGuacg-CGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 153362 0.7 0.702455
Target:  5'- ---gGCCGaGCGuCGUuCGCGCGGCGUg -3'
miRNA:   3'- uuuaUGGC-CGC-GUAcGCGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 193463 0.69 0.721981
Target:  5'- cGGUACCaGGUGUucguggacGCGUACGGCGCc -3'
miRNA:   3'- uUUAUGG-CCGCGua------CGCGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 136156 0.69 0.731638
Target:  5'- ---aGCgGGCGCA-GCGUGCGGacCGCAg -3'
miRNA:   3'- uuuaUGgCCGCGUaCGCGUGCC--GCGU- -5'
1630 3' -57.7 NC_001347.2 + 1669 0.69 0.732599
Target:  5'- ---aGCCGGCGCuccgacagacguugcUGCGCgccgaggaggcgACGGCGCu -3'
miRNA:   3'- uuuaUGGCCGCGu--------------ACGCG------------UGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 159560 0.69 0.741211
Target:  5'- aAGGUACCGGCG-GUGUuggaGCGGCGCc -3'
miRNA:   3'- -UUUAUGGCCGCgUACGcg--UGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 193814 0.69 0.750694
Target:  5'- ----cCCuaGUGC-UGCGCACGGCGCGc -3'
miRNA:   3'- uuuauGGc-CGCGuACGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 136498 0.69 0.760077
Target:  5'- ---gGCCcGCGCAUGCGCccCGGgGCc -3'
miRNA:   3'- uuuaUGGcCGCGUACGCGu-GCCgCGu -5'
1630 3' -57.7 NC_001347.2 + 139324 0.68 0.769351
Target:  5'- --cUGgCGGCGU-UGUGCGCGGCGg- -3'
miRNA:   3'- uuuAUgGCCGCGuACGCGUGCCGCgu -5'
1630 3' -57.7 NC_001347.2 + 166174 0.68 0.769351
Target:  5'- ---cAUCGGCGCuagcGCGCGauguCGGUGCAg -3'
miRNA:   3'- uuuaUGGCCGCGua--CGCGU----GCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 38754 0.68 0.769351
Target:  5'- ---cGCCGGCugaggcagcaGCGUcGCGCGCGGgGUg -3'
miRNA:   3'- uuuaUGGCCG----------CGUA-CGCGUGCCgCGu -5'
1630 3' -57.7 NC_001347.2 + 195771 0.68 0.769351
Target:  5'- ---aGCCuGCGCuacgGCGCACGGCa-- -3'
miRNA:   3'- uuuaUGGcCGCGua--CGCGUGCCGcgu -5'
1630 3' -57.7 NC_001347.2 + 38679 0.68 0.796435
Target:  5'- -cGUGCCGGCcCAc-CGC-CGGCGCAg -3'
miRNA:   3'- uuUAUGGCCGcGUacGCGuGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 82517 0.68 0.796435
Target:  5'- ---gGCCaGCGCA-GCGUAgcUGGCGCGa -3'
miRNA:   3'- uuuaUGGcCGCGUaCGCGU--GCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 7966 0.68 0.799955
Target:  5'- cGGUGgCGGCGgcagaccaaCAUGCGCcgaagacacagcuugACGGCGCGa -3'
miRNA:   3'- uUUAUgGCCGC---------GUACGCG---------------UGCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.