miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 3' -57.7 NC_001347.2 + 194638 0.66 0.87634
Target:  5'- -cGUGCCGGaCGCAaa--CACGGCGCc -3'
miRNA:   3'- uuUAUGGCC-GCGUacgcGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 128437 0.66 0.87634
Target:  5'- -----aCGGCGCcugcUGCGUggccgucaaGCGGCGCGa -3'
miRNA:   3'- uuuaugGCCGCGu---ACGCG---------UGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 99294 0.66 0.87634
Target:  5'- cGAcgGCaCGGCGCGUaacGCuGCACGGCuaGa -3'
miRNA:   3'- -UUuaUG-GCCGCGUA---CG-CGUGCCGcgU- -5'
1630 3' -57.7 NC_001347.2 + 171824 0.66 0.875635
Target:  5'- ---cAUCGGCGUGgcuggcuUGCaCACGGCGCu -3'
miRNA:   3'- uuuaUGGCCGCGU-------ACGcGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 94810 0.66 0.874218
Target:  5'- ---cGCCGGCGUGcgucaugagguagcUGUacacgccgcugaGCACGGCGCu -3'
miRNA:   3'- uuuaUGGCCGCGU--------------ACG------------CGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 68705 0.66 0.869195
Target:  5'- ---cGgCGGCGCAaa-GCGCGaGCGCAa -3'
miRNA:   3'- uuuaUgGCCGCGUacgCGUGC-CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 91718 0.66 0.869195
Target:  5'- -----gCGGCGCcaagaGCACGGCGCu -3'
miRNA:   3'- uuuaugGCCGCGuacg-CGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 118521 0.66 0.869195
Target:  5'- ---aGCUGGCGCAgGCcCuCGGCGUAc -3'
miRNA:   3'- uuuaUGGCCGCGUaCGcGuGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 154688 0.66 0.869195
Target:  5'- gAGGUGCUGaGCGC---CGCACGGgGCGc -3'
miRNA:   3'- -UUUAUGGC-CGCGuacGCGUGCCgCGU- -5'
1630 3' -57.7 NC_001347.2 + 22494 0.67 0.861845
Target:  5'- ---cACCGGCaucacCGUGUGCACGG-GCu -3'
miRNA:   3'- uuuaUGGCCGc----GUACGCGUGCCgCGu -5'
1630 3' -57.7 NC_001347.2 + 1557 0.67 0.85734
Target:  5'- --cUAgCGGCGCGcgacGCggacgagugguuucgGCACGGCGCGg -3'
miRNA:   3'- uuuAUgGCCGCGUa---CG---------------CGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 126641 0.67 0.854297
Target:  5'- ---cGCaCGGCGC-UG-GCACGcGCGCGg -3'
miRNA:   3'- uuuaUG-GCCGCGuACgCGUGC-CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 154781 0.67 0.853532
Target:  5'- cAGAUGCUgaugauGGCGCAUagguuacaGCGCgugucgauggccaGCGGCGCGc -3'
miRNA:   3'- -UUUAUGG------CCGCGUA--------CGCG-------------UGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 141816 0.67 0.846556
Target:  5'- -cGUGCCGGCGCccAUGgcCGCcacugUGGCGCGu -3'
miRNA:   3'- uuUAUGGCCGCG--UAC--GCGu----GCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 193585 0.67 0.822241
Target:  5'- ----cCCGGUGCAcgaauccaucUGCGCGCGuuGCAa -3'
miRNA:   3'- uuuauGGCCGCGU----------ACGCGUGCcgCGU- -5'
1630 3' -57.7 NC_001347.2 + 178386 0.67 0.822241
Target:  5'- ----cCUGGCGCcca-GCAUGGCGCAg -3'
miRNA:   3'- uuuauGGCCGCGuacgCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 38362 0.67 0.822241
Target:  5'- -----aCGGCucccGCuaucGCGCACGGCGCGu -3'
miRNA:   3'- uuuaugGCCG----CGua--CGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 67512 0.68 0.813795
Target:  5'- cGGUGCCGGCGgccaCGUcCGuCACGGCGUu -3'
miRNA:   3'- uUUAUGGCCGC----GUAcGC-GUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 18811 0.68 0.813795
Target:  5'- -cGUGCU-GCGC-UG-GCACGGCGCAc -3'
miRNA:   3'- uuUAUGGcCGCGuACgCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 174830 0.68 0.813795
Target:  5'- --cUugUGGCGCcUGUGCAUGaaGCGCGa -3'
miRNA:   3'- uuuAugGCCGCGuACGCGUGC--CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.