miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 3' -57.7 NC_001347.2 + 1181 0.75 0.431826
Target:  5'- gGAAUACCaggccaugGGCGCcgugugGCGCGCGGCGUu -3'
miRNA:   3'- -UUUAUGG--------CCGCGua----CGCGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 1236 0.66 0.87634
Target:  5'- ---gGCCGcGC-CAUGCGCAagUGGuCGCAg -3'
miRNA:   3'- uuuaUGGC-CGcGUACGCGU--GCC-GCGU- -5'
1630 3' -57.7 NC_001347.2 + 1557 0.67 0.85734
Target:  5'- --cUAgCGGCGCGcgacGCggacgagugguuucgGCACGGCGCGg -3'
miRNA:   3'- uuuAUgGCCGCGUa---CG---------------CGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 1626 0.68 0.813795
Target:  5'- ---aACCGGCuggGCGUGgGCACcccGCGCGc -3'
miRNA:   3'- uuuaUGGCCG---CGUACgCGUGc--CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 1669 0.69 0.732599
Target:  5'- ---aGCCGGCGCuccgacagacguugcUGCGCgccgaggaggcgACGGCGCu -3'
miRNA:   3'- uuuaUGGCCGCGu--------------ACGCG------------UGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 1792 0.68 0.80519
Target:  5'- uGGUACUgcugGGCGCGUG-GCAggagcUGGCGCAg -3'
miRNA:   3'- uUUAUGG----CCGCGUACgCGU-----GCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 1912 0.75 0.406052
Target:  5'- ---gGCUGGCGC-UGgGCGCGGUGCu -3'
miRNA:   3'- uuuaUGGCCGCGuACgCGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 2029 0.68 0.80519
Target:  5'- ---cGCCGGCGgGgacGCGC-CGuGCGCGa -3'
miRNA:   3'- uuuaUGGCCGCgUa--CGCGuGC-CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 2359 0.71 0.602724
Target:  5'- -cGUGCUgGGCGCGcugGCGCugGGaCGCGa -3'
miRNA:   3'- uuUAUGG-CCGCGUa--CGCGugCC-GCGU- -5'
1630 3' -57.7 NC_001347.2 + 7966 0.68 0.799955
Target:  5'- cGGUGgCGGCGgcagaccaaCAUGCGCcgaagacacagcuugACGGCGCGa -3'
miRNA:   3'- uUUAUgGCCGC---------GUACGCG---------------UGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 18811 0.68 0.813795
Target:  5'- -cGUGCU-GCGC-UG-GCACGGCGCAc -3'
miRNA:   3'- uuUAUGGcCGCGuACgCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 22494 0.67 0.861845
Target:  5'- ---cACCGGCaucacCGUGUGCACGG-GCu -3'
miRNA:   3'- uuuaUGGCCGc----GUACGCGUGCCgCGu -5'
1630 3' -57.7 NC_001347.2 + 37919 0.7 0.702455
Target:  5'- ---gGCuCGGCGCccacaGCGCGGCGCGc -3'
miRNA:   3'- uuuaUG-GCCGCGuacg-CGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 38362 0.67 0.822241
Target:  5'- -----aCGGCucccGCuaucGCGCACGGCGCGu -3'
miRNA:   3'- uuuaugGCCG----CGua--CGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 38679 0.68 0.796435
Target:  5'- -cGUGCCGGCcCAc-CGC-CGGCGCAg -3'
miRNA:   3'- uuUAUGGCCGcGUacGCGuGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 38754 0.68 0.769351
Target:  5'- ---cGCCGGCugaggcagcaGCGUcGCGCGCGGgGUg -3'
miRNA:   3'- uuuaUGGCCG----------CGUA-CGCGUGCCgCGu -5'
1630 3' -57.7 NC_001347.2 + 39152 0.7 0.691614
Target:  5'- -cGUGCCcGCGuCGcgcugcgaccacuUGCGCAUGGCGCGg -3'
miRNA:   3'- uuUAUGGcCGC-GU-------------ACGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 39686 0.71 0.612723
Target:  5'- -cGUGCaCGGCGCGUGCugGCGCcgccuuGGCGCc -3'
miRNA:   3'- uuUAUG-GCCGCGUACG--CGUG------CCGCGu -5'
1630 3' -57.7 NC_001347.2 + 40474 0.66 0.902788
Target:  5'- --cUGCCGGUGCGUGuCGUcccACGGUa-- -3'
miRNA:   3'- uuuAUGGCCGCGUAC-GCG---UGCCGcgu -5'
1630 3' -57.7 NC_001347.2 + 67512 0.68 0.813795
Target:  5'- cGGUGCCGGCGgccaCGUcCGuCACGGCGUu -3'
miRNA:   3'- uUUAUGGCCGC----GUAcGC-GUGCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.