miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 3' -57.7 NC_001347.2 + 68705 0.66 0.869195
Target:  5'- ---cGgCGGCGCAaa-GCGCGaGCGCAa -3'
miRNA:   3'- uuuaUgGCCGCGUacgCGUGC-CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 77306 0.66 0.896504
Target:  5'- -cGUACUugGGCGUggGC-CGCGGCGUg -3'
miRNA:   3'- uuUAUGG--CCGCGuaCGcGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 77434 0.68 0.80519
Target:  5'- cAGGUGCUGcGCGaccCGUGCGUGCuGCGCAa -3'
miRNA:   3'- -UUUAUGGC-CGC---GUACGCGUGcCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 77873 0.66 0.889999
Target:  5'- ---gGCCGaGCGCcuggGCGC-CGuGCGCGu -3'
miRNA:   3'- uuuaUGGC-CGCGua--CGCGuGC-CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 78674 0.72 0.582793
Target:  5'- ---gGCCGuGCGCAagGCGCgcgacGCGGCGCc -3'
miRNA:   3'- uuuaUGGC-CGCGUa-CGCG-----UGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 81491 0.7 0.662787
Target:  5'- ---cGCuCGGCGgGUGCGCAccgcCGGUGCu -3'
miRNA:   3'- uuuaUG-GCCGCgUACGCGU----GCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 82391 0.66 0.883276
Target:  5'- ---cACCGGCGUgaagGUGCGCGCcaacaCGCGg -3'
miRNA:   3'- uuuaUGGCCGCG----UACGCGUGcc---GCGU- -5'
1630 3' -57.7 NC_001347.2 + 82517 0.68 0.796435
Target:  5'- ---gGCCaGCGCA-GCGUAgcUGGCGCGa -3'
miRNA:   3'- uuuaUGGcCGCGUaCGCGU--GCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 85942 0.66 0.889999
Target:  5'- uGGAUGcCCGGCGaga-CGC-CGGCGCGc -3'
miRNA:   3'- -UUUAU-GGCCGCguacGCGuGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 88251 0.66 0.87634
Target:  5'- ---cGCCGGUGaagagaGCGCGGCGUAc -3'
miRNA:   3'- uuuaUGGCCGCguacg-CGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 88654 0.66 0.87634
Target:  5'- ---gGCCuGCGCAgcuucGCGCAuccacuggcgcCGGCGCGc -3'
miRNA:   3'- uuuaUGGcCGCGUa----CGCGU-----------GCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 91718 0.66 0.869195
Target:  5'- -----gCGGCGCcaagaGCACGGCGCu -3'
miRNA:   3'- uuuaugGCCGCGuacg-CGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 93417 0.7 0.692602
Target:  5'- uAGUACa-GCGUAgaucucgucGCGCACGGCGCGa -3'
miRNA:   3'- uUUAUGgcCGCGUa--------CGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 94810 0.66 0.874218
Target:  5'- ---cGCCGGCGUGcgucaugagguagcUGUacacgccgcugaGCACGGCGCu -3'
miRNA:   3'- uuuaUGGCCGCGU--------------ACG------------CGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 99294 0.66 0.87634
Target:  5'- cGAcgGCaCGGCGCGUaacGCuGCACGGCuaGa -3'
miRNA:   3'- -UUuaUG-GCCGCGUA---CG-CGUGCCGcgU- -5'
1630 3' -57.7 NC_001347.2 + 100880 0.66 0.883276
Target:  5'- ---gGCgCGGCGCA-GCGC-CGGC-CAu -3'
miRNA:   3'- uuuaUG-GCCGCGUaCGCGuGCCGcGU- -5'
1630 3' -57.7 NC_001347.2 + 108306 0.68 0.80519
Target:  5'- ---cGCCGGUGC-UGcCGCACGaGaCGCGa -3'
miRNA:   3'- uuuaUGGCCGCGuAC-GCGUGC-C-GCGU- -5'
1630 3' -57.7 NC_001347.2 + 109470 0.66 0.896504
Target:  5'- ---cACCGGCgGCG-GCGCcAUGGCGg- -3'
miRNA:   3'- uuuaUGGCCG-CGUaCGCG-UGCCGCgu -5'
1630 3' -57.7 NC_001347.2 + 115511 0.66 0.889999
Target:  5'- ---aACCGGUGCcgGcCGCGCuagcgGGCuGCAg -3'
miRNA:   3'- uuuaUGGCCGCGuaC-GCGUG-----CCG-CGU- -5'
1630 3' -57.7 NC_001347.2 + 116650 0.71 0.652791
Target:  5'- --uUGCUGaGCuGCAUGaGCACGGCGCc -3'
miRNA:   3'- uuuAUGGC-CG-CGUACgCGUGCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.