miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 3' -57.7 NC_001347.2 + 201813 0.66 0.889999
Target:  5'- ---gGCCGGCuGCAUGCacaucCACGcguucGCGCAg -3'
miRNA:   3'- uuuaUGGCCG-CGUACGc----GUGC-----CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 198366 0.7 0.692602
Target:  5'- uGAGUuuCUGGCGCAggugggugGCGCGCGggucGCGCAa -3'
miRNA:   3'- -UUUAu-GGCCGCGUa-------CGCGUGC----CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 196953 0.66 0.900926
Target:  5'- ---cGCCGGgGCugucgcGCGCcgccgacgcccgagACGGCGCGc -3'
miRNA:   3'- uuuaUGGCCgCGua----CGCG--------------UGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 195897 0.72 0.576838
Target:  5'- ---cGCCGGCGCuuuccgccgucugGUGCACgaGGCGCAg -3'
miRNA:   3'- uuuaUGGCCGCGua-----------CGCGUG--CCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 195771 0.68 0.769351
Target:  5'- ---aGCCuGCGCuacgGCGCACGGCa-- -3'
miRNA:   3'- uuuaUGGcCGCGua--CGCGUGCCGcgu -5'
1630 3' -57.7 NC_001347.2 + 194638 0.66 0.87634
Target:  5'- -cGUGCCGGaCGCAaa--CACGGCGCc -3'
miRNA:   3'- uuUAUGGCC-GCGUacgcGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 193814 0.69 0.750694
Target:  5'- ----cCCuaGUGC-UGCGCACGGCGCGc -3'
miRNA:   3'- uuuauGGc-CGCGuACGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 193585 0.67 0.822241
Target:  5'- ----cCCGGUGCAcgaauccaucUGCGCGCGuuGCAa -3'
miRNA:   3'- uuuauGGCCGCGU----------ACGCGUGCcgCGU- -5'
1630 3' -57.7 NC_001347.2 + 193463 0.69 0.721981
Target:  5'- cGGUACCaGGUGUucguggacGCGUACGGCGCc -3'
miRNA:   3'- uUUAUGG-CCGCGua------CGCGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 191242 0.72 0.543389
Target:  5'- ----cCCGGCGuCGUGaaagGCACGGCGUAa -3'
miRNA:   3'- uuuauGGCCGC-GUACg---CGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 181742 0.7 0.702455
Target:  5'- ---gACCGcUGCGUGCGCcgACGGCGUu -3'
miRNA:   3'- uuuaUGGCcGCGUACGCG--UGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 178386 0.67 0.822241
Target:  5'- ----cCUGGCGCcca-GCAUGGCGCAg -3'
miRNA:   3'- uuuauGGCCGCGuacgCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 176627 0.73 0.504897
Target:  5'- ----cCCGGCcCAgacgGUGCACGGCGCGg -3'
miRNA:   3'- uuuauGGCCGcGUa---CGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 174830 0.68 0.813795
Target:  5'- --cUugUGGCGCcUGUGCAUGaaGCGCGa -3'
miRNA:   3'- uuuAugGCCGCGuACGCGUGC--CGCGU- -5'
1630 3' -57.7 NC_001347.2 + 173975 0.73 0.533667
Target:  5'- ---cGCgGGcCGCGUgccugggaacgcGCGCACGGCGCGg -3'
miRNA:   3'- uuuaUGgCC-GCGUA------------CGCGUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 171824 0.66 0.875635
Target:  5'- ---cAUCGGCGUGgcuggcuUGCaCACGGCGCu -3'
miRNA:   3'- uuuaUGGCCGCGU-------ACGcGUGCCGCGu -5'
1630 3' -57.7 NC_001347.2 + 170370 0.66 0.900926
Target:  5'- ---aGCCGGCGCGggagcUGCcguccgacaggaacGCGCuguGGCGCGa -3'
miRNA:   3'- uuuaUGGCCGCGU-----ACG--------------CGUG---CCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 167685 0.68 0.80519
Target:  5'- ---aGCCGuuGCAcGCGuCGCGGCGUAu -3'
miRNA:   3'- uuuaUGGCcgCGUaCGC-GUGCCGCGU- -5'
1630 3' -57.7 NC_001347.2 + 166702 0.66 0.896504
Target:  5'- --cUGCCGGCGCugcUGCGCAUcaCGUc -3'
miRNA:   3'- uuuAUGGCCGCGu--ACGCGUGccGCGu -5'
1630 3' -57.7 NC_001347.2 + 166174 0.68 0.769351
Target:  5'- ---cAUCGGCGCuagcGCGCGauguCGGUGCAg -3'
miRNA:   3'- uuuaUGGCCGCGua--CGCGU----GCCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.