miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 5' -50.2 NC_001347.2 + 195614 0.66 0.999266
Target:  5'- ----cGCCGAuuCGUaaucgacaggaggcuGUGCGCGCcGGCCu -3'
miRNA:   3'- uaaaaUGGCU--GCG---------------UACGCGUGaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 85945 0.66 0.999204
Target:  5'- ---aUGCCcggcgaGACGCcgGCGCGCgaACCc -3'
miRNA:   3'- uaaaAUGG------CUGCGuaCGCGUGacUGG- -5'
1630 5' -50.2 NC_001347.2 + 150249 0.66 0.999204
Target:  5'- ----gGCCGGgGcCAUcGCGCgGCUGGCUa -3'
miRNA:   3'- uaaaaUGGCUgC-GUA-CGCG-UGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 2454 0.66 0.999204
Target:  5'- ----gGCCG-CGCuggGaCGCGCUGcACCu -3'
miRNA:   3'- uaaaaUGGCuGCGua-C-GCGUGAC-UGG- -5'
1630 5' -50.2 NC_001347.2 + 100871 0.66 0.999204
Target:  5'- ----aGCCGAgGCGgcgcgGCGCAgCgccGGCCa -3'
miRNA:   3'- uaaaaUGGCUgCGUa----CGCGU-Ga--CUGG- -5'
1630 5' -50.2 NC_001347.2 + 18812 0.66 0.999204
Target:  5'- ---gUGCUG-CGCuggcacgGCGCACUGGgCa -3'
miRNA:   3'- uaaaAUGGCuGCGua-----CGCGUGACUgG- -5'
1630 5' -50.2 NC_001347.2 + 208087 0.66 0.999204
Target:  5'- ---gUACCGcugcCGCAgauggGCGCACcGACg -3'
miRNA:   3'- uaaaAUGGCu---GCGUa----CGCGUGaCUGg -5'
1630 5' -50.2 NC_001347.2 + 200990 0.66 0.999028
Target:  5'- ----cGCCuGCGaCGUGCGCGacGACCg -3'
miRNA:   3'- uaaaaUGGcUGC-GUACGCGUgaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 117806 0.66 0.999028
Target:  5'- ----aACgGcCGCucgGCGCACUGcGCCa -3'
miRNA:   3'- uaaaaUGgCuGCGua-CGCGUGAC-UGG- -5'
1630 5' -50.2 NC_001347.2 + 39523 0.66 0.999028
Target:  5'- ----gGCgCGGCGaCAUGCcguuGCGCUGgGCCa -3'
miRNA:   3'- uaaaaUG-GCUGC-GUACG----CGUGAC-UGG- -5'
1630 5' -50.2 NC_001347.2 + 83895 0.66 0.998907
Target:  5'- ----cGCgGACGCGguagcgGCagugucaaguaccagGCGCUGGCCa -3'
miRNA:   3'- uaaaaUGgCUGCGUa-----CG---------------CGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 76977 0.66 0.99882
Target:  5'- --cUUGCCGGCGCccgccGUGC-CGgUGACg -3'
miRNA:   3'- uaaAAUGGCUGCG-----UACGcGUgACUGg -5'
1630 5' -50.2 NC_001347.2 + 175240 0.66 0.99882
Target:  5'- uGUUUUGCCGuCGUuUGCGCAaaaagaaggGGCUc -3'
miRNA:   3'- -UAAAAUGGCuGCGuACGCGUga-------CUGG- -5'
1630 5' -50.2 NC_001347.2 + 36428 0.66 0.998797
Target:  5'- --gUUGCCGACgGCG-GCGCGgUccgucgaGACCg -3'
miRNA:   3'- uaaAAUGGCUG-CGUaCGCGUgA-------CUGG- -5'
1630 5' -50.2 NC_001347.2 + 113436 0.66 0.998575
Target:  5'- ---cUGCCGcaGCGC-UGC-CACUGugCa -3'
miRNA:   3'- uaaaAUGGC--UGCGuACGcGUGACugG- -5'
1630 5' -50.2 NC_001347.2 + 193282 0.66 0.998575
Target:  5'- ---cUugCGGCGCuucgagggcucGUGCGUgucgcuggGCUGGCCc -3'
miRNA:   3'- uaaaAugGCUGCG-----------UACGCG--------UGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 205155 0.66 0.998575
Target:  5'- ----gACuCGGuCGCucgAUGCGCACgGACCc -3'
miRNA:   3'- uaaaaUG-GCU-GCG---UACGCGUGaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 206997 0.66 0.998575
Target:  5'- ---gUAUCGAUGCGgcaggcgaaUGCGCagccGCUGACa -3'
miRNA:   3'- uaaaAUGGCUGCGU---------ACGCG----UGACUGg -5'
1630 5' -50.2 NC_001347.2 + 92387 0.66 0.998575
Target:  5'- ----cGCCGGCGCcgccuaGCGuCACUG-CCu -3'
miRNA:   3'- uaaaaUGGCUGCGua----CGC-GUGACuGG- -5'
1630 5' -50.2 NC_001347.2 + 104528 0.66 0.998288
Target:  5'- ----aACCcGCGCggGCGUgccuccugcauGCUGGCCg -3'
miRNA:   3'- uaaaaUGGcUGCGuaCGCG-----------UGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.