miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 5' -50.2 NC_001347.2 + 136381 1.12 0.010105
Target:  5'- aAUUUUACCGACGCAUGCGCACUGACCg -3'
miRNA:   3'- -UAAAAUGGCUGCGUACGCGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 136455 0.89 0.216327
Target:  5'- aAUUUUACCGGCGCAUGCGCAgggcGACCc -3'
miRNA:   3'- -UAAAAUGGCUGCGUACGCGUga--CUGG- -5'
1630 5' -50.2 NC_001347.2 + 136347 0.86 0.341596
Target:  5'- ---aUACCGGCGCAUGCGCAC-GGCg -3'
miRNA:   3'- uaaaAUGGCUGCGUACGCGUGaCUGg -5'
1630 5' -50.2 NC_001347.2 + 136423 0.82 0.482159
Target:  5'- ---aUACUGGCGCAUGCGCAC-GACa -3'
miRNA:   3'- uaaaAUGGCUGCGUACGCGUGaCUGg -5'
1630 5' -50.2 NC_001347.2 + 136565 0.78 0.707287
Target:  5'- -----cCCGGCGCAUGCGCACUcGAgucaCCa -3'
miRNA:   3'- uaaaauGGCUGCGUACGCGUGA-CU----GG- -5'
1630 5' -50.2 NC_001347.2 + 40449 0.77 0.757278
Target:  5'- uGUUguguCCGACGCugccUGCGCACUG-CCg -3'
miRNA:   3'- -UAAaau-GGCUGCGu---ACGCGUGACuGG- -5'
1630 5' -50.2 NC_001347.2 + 199024 0.77 0.76697
Target:  5'- ----aGCCGcCGCAgagacgugGCGUACUGGCCg -3'
miRNA:   3'- uaaaaUGGCuGCGUa-------CGCGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 194567 0.76 0.804396
Target:  5'- ---cUACCGGCGCuucucgugccUGCGCcagGCUGGCCg -3'
miRNA:   3'- uaaaAUGGCUGCGu---------ACGCG---UGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 105284 0.74 0.892406
Target:  5'- ----cGCCGACGUagGCaaACUGACCa -3'
miRNA:   3'- uaaaaUGGCUGCGuaCGcgUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 199246 0.73 0.928865
Target:  5'- --aUUAuCCGACGCGUGagauCGCGCUcGCCa -3'
miRNA:   3'- uaaAAU-GGCUGCGUAC----GCGUGAcUGG- -5'
1630 5' -50.2 NC_001347.2 + 197568 0.72 0.934076
Target:  5'- ----gGCCGACgGCA-GCGUGCUGugCu -3'
miRNA:   3'- uaaaaUGGCUG-CGUaCGCGUGACugG- -5'
1630 5' -50.2 NC_001347.2 + 126673 0.72 0.934076
Target:  5'- ---gUACCGGCGCGUGguggcuuaCGaCGCUGACg -3'
miRNA:   3'- uaaaAUGGCUGCGUAC--------GC-GUGACUGg -5'
1630 5' -50.2 NC_001347.2 + 171519 0.72 0.939039
Target:  5'- ----gGCCGACaGCGUGUGC-CUGccGCCg -3'
miRNA:   3'- uaaaaUGGCUG-CGUACGCGuGAC--UGG- -5'
1630 5' -50.2 NC_001347.2 + 168799 0.72 0.952456
Target:  5'- ----cAUgGACGCGcGCGCGgUGGCCa -3'
miRNA:   3'- uaaaaUGgCUGCGUaCGCGUgACUGG- -5'
1630 5' -50.2 NC_001347.2 + 139913 0.72 0.952456
Target:  5'- ----aACCGAucacCGCGaucugauccGCGCGCUGACCg -3'
miRNA:   3'- uaaaaUGGCU----GCGUa--------CGCGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 52584 0.71 0.96373
Target:  5'- --aUUACUggGACGCGUgcucucGCGCGCUGcCCg -3'
miRNA:   3'- uaaAAUGG--CUGCGUA------CGCGUGACuGG- -5'
1630 5' -50.2 NC_001347.2 + 136156 0.7 0.972988
Target:  5'- ----aGCgGGCGCA-GCGUGCgGACCg -3'
miRNA:   3'- uaaaaUGgCUGCGUaCGCGUGaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 136638 0.7 0.978124
Target:  5'- ----gACUG-CGCAUGCGCACggaaacGCCg -3'
miRNA:   3'- uaaaaUGGCuGCGUACGCGUGac----UGG- -5'
1630 5' -50.2 NC_001347.2 + 207663 0.7 0.980183
Target:  5'- ---aUGCCGGCGCcuaacgguccuuuGUGCGCGCU--CCu -3'
miRNA:   3'- uaaaAUGGCUGCG-------------UACGCGUGAcuGG- -5'
1630 5' -50.2 NC_001347.2 + 137460 0.7 0.980183
Target:  5'- ---cUACCGcGCGCGUGCGUGCgcgcgcgUGACg -3'
miRNA:   3'- uaaaAUGGC-UGCGUACGCGUG-------ACUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.