Results 21 - 40 of 80 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 86277 | 0.7 | 0.980403 |
Target: 5'- -----uUCGGCgGCGUGC-CGCUGACCc -3' miRNA: 3'- uaaaauGGCUG-CGUACGcGUGACUGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 37647 | 0.7 | 0.9825 |
Target: 5'- ----aGCUGACGCuUGCcugaGCACUGAgCg -3' miRNA: 3'- uaaaaUGGCUGCGuACG----CGUGACUgG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 22456 | 0.7 | 0.9825 |
Target: 5'- aAUUUUGCUcaucucacgGugGCGUGCuuGCUGAUCa -3' miRNA: 3'- -UAAAAUGG---------CugCGUACGcgUGACUGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 136498 | 0.69 | 0.984423 |
Target: 5'- ----gGCCcGCGCAUGCGCcCcggGGCCc -3' miRNA: 3'- uaaaaUGGcUGCGUACGCGuGa--CUGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 185039 | 0.69 | 0.984423 |
Target: 5'- aGUUcgGCCGGCGC--GCGCuugaGCUGugCg -3' miRNA: 3'- -UAAaaUGGCUGCGuaCGCG----UGACugG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 195953 | 0.69 | 0.986182 |
Target: 5'- ---gUGCCGccaaACGCAU-CGCuCUGGCCg -3' miRNA: 3'- uaaaAUGGC----UGCGUAcGCGuGACUGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 25379 | 0.69 | 0.986182 |
Target: 5'- ----cGCCGugGguUG-GCAgCUGGCCg -3' miRNA: 3'- uaaaaUGGCugCguACgCGU-GACUGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 4204 | 0.69 | 0.986182 |
Target: 5'- ---cUGCCGACGcCGUGCGCGgUuuuuCCg -3' miRNA: 3'- uaaaAUGGCUGC-GUACGCGUgAcu--GG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 147906 | 0.69 | 0.987784 |
Target: 5'- ----gGCCGugGgugGCGCGgUGGCCu -3' miRNA: 3'- uaaaaUGGCugCguaCGCGUgACUGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 96297 | 0.69 | 0.987784 |
Target: 5'- ----cGCCGaguGCGCG-GCGCACaUGAUCa -3' miRNA: 3'- uaaaaUGGC---UGCGUaCGCGUG-ACUGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 157260 | 0.69 | 0.987784 |
Target: 5'- ----cACCGGCGCAguuUGCGgCGCaGACg -3' miRNA: 3'- uaaaaUGGCUGCGU---ACGC-GUGaCUGg -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 27347 | 0.69 | 0.989239 |
Target: 5'- -----cCCGACGaCGUG-GUAUUGACCa -3' miRNA: 3'- uaaaauGGCUGC-GUACgCGUGACUGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 71716 | 0.69 | 0.990555 |
Target: 5'- ----cGCCGAccCGCGUGUGCcCUG-CCu -3' miRNA: 3'- uaaaaUGGCU--GCGUACGCGuGACuGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 172700 | 0.68 | 0.991741 |
Target: 5'- ----cGCCGACGCugGCGCugcgGCUGaaGCCg -3' miRNA: 3'- uaaaaUGGCUGCGuaCGCG----UGAC--UGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 105542 | 0.68 | 0.991741 |
Target: 5'- ----gGgCGACGCGcuaUGCGUGCUGccGCCg -3' miRNA: 3'- uaaaaUgGCUGCGU---ACGCGUGAC--UGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 63112 | 0.68 | 0.991741 |
Target: 5'- ----gGCCGcCGCGgccGcCGCugUGGCCg -3' miRNA: 3'- uaaaaUGGCuGCGUa--C-GCGugACUGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 2353 | 0.68 | 0.992806 |
Target: 5'- ----cGCgGGCGUGcuggGCGCGCUGGCg -3' miRNA: 3'- uaaaaUGgCUGCGUa---CGCGUGACUGg -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 63077 | 0.68 | 0.992806 |
Target: 5'- ---cUGCCGGCGgGUGUGgGCUcGGCa -3' miRNA: 3'- uaaaAUGGCUGCgUACGCgUGA-CUGg -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 200627 | 0.68 | 0.992806 |
Target: 5'- ----cGCCGucgagacccugcACuGCAUGCGCuacCUGACCu -3' miRNA: 3'- uaaaaUGGC------------UG-CGUACGCGu--GACUGG- -5' |
|||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 88676 | 0.68 | 0.993758 |
Target: 5'- ----cACUGGCGCcgGCGCGCccugcuggGACg -3' miRNA: 3'- uaaaaUGGCUGCGuaCGCGUGa-------CUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home