miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 5' -50.2 NC_001347.2 + 157004 0.66 0.998288
Target:  5'- ----gGCCGugGCugcccGCGCGCUuugcGACUc -3'
miRNA:   3'- uaaaaUGGCugCGua---CGCGUGA----CUGG- -5'
1630 5' -50.2 NC_001347.2 + 104528 0.66 0.998288
Target:  5'- ----aACCcGCGCggGCGUgccuccugcauGCUGGCCg -3'
miRNA:   3'- uaaaaUGGcUGCGuaCGCG-----------UGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 188860 0.66 0.998288
Target:  5'- ---cUGCUGGCGCcgGCGCu---GCCa -3'
miRNA:   3'- uaaaAUGGCUGCGuaCGCGugacUGG- -5'
1630 5' -50.2 NC_001347.2 + 66141 0.67 0.997954
Target:  5'- ----cGCCGACGCGcacaccUGCGaguacCUGAUCg -3'
miRNA:   3'- uaaaaUGGCUGCGU------ACGCgu---GACUGG- -5'
1630 5' -50.2 NC_001347.2 + 193762 0.67 0.997954
Target:  5'- ---gUAgaGGCGCAccgcgagGCGCaACUGACCc -3'
miRNA:   3'- uaaaAUggCUGCGUa------CGCG-UGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 118521 0.67 0.997954
Target:  5'- ----aGCUGGCGCAggcccucgGCGUACUGcagGCUg -3'
miRNA:   3'- uaaaaUGGCUGCGUa-------CGCGUGAC---UGG- -5'
1630 5' -50.2 NC_001347.2 + 143768 0.67 0.997729
Target:  5'- -------gGACGaCAUGCGCccaaugcuacgaggaGCUGACCa -3'
miRNA:   3'- uaaaauggCUGC-GUACGCG---------------UGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 28522 0.67 0.997567
Target:  5'- ---aUACCaACGCAUcauuuuaGCACUGACUg -3'
miRNA:   3'- uaaaAUGGcUGCGUAcg-----CGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 93201 0.67 0.997567
Target:  5'- ----cGCCGAgCGCu--CGCGCUGGCg -3'
miRNA:   3'- uaaaaUGGCU-GCGuacGCGUGACUGg -5'
1630 5' -50.2 NC_001347.2 + 193237 0.67 0.997121
Target:  5'- ----gGCCGACcuguGCGUGCGaCGC-GACUa -3'
miRNA:   3'- uaaaaUGGCUG----CGUACGC-GUGaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 157759 0.67 0.996609
Target:  5'- -----uUCGACGCccGCGCugauUUGGCCg -3'
miRNA:   3'- uaaaauGGCUGCGuaCGCGu---GACUGG- -5'
1630 5' -50.2 NC_001347.2 + 167352 0.67 0.996024
Target:  5'- ---gUACUGAacCGCAaagUGCGUAUUGACg -3'
miRNA:   3'- uaaaAUGGCU--GCGU---ACGCGUGACUGg -5'
1630 5' -50.2 NC_001347.2 + 40971 0.67 0.996024
Target:  5'- ----cGCCGcagacuACGCugcuUGCGCACaGGCCc -3'
miRNA:   3'- uaaaaUGGC------UGCGu---ACGCGUGaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 15050 0.67 0.996024
Target:  5'- ----cGCCGugGUAUGUGCuagGCgUGACg -3'
miRNA:   3'- uaaaaUGGCugCGUACGCG---UG-ACUGg -5'
1630 5' -50.2 NC_001347.2 + 196972 0.68 0.995359
Target:  5'- ----cGCCGACGCccgagacgGCGCGCgu-CCa -3'
miRNA:   3'- uaaaaUGGCUGCGua------CGCGUGacuGG- -5'
1630 5' -50.2 NC_001347.2 + 166702 0.68 0.995359
Target:  5'- ---cUGCCGGCGCugcUGCGCAUcacGuCCu -3'
miRNA:   3'- uaaaAUGGCUGCGu--ACGCGUGa--CuGG- -5'
1630 5' -50.2 NC_001347.2 + 153224 0.68 0.995359
Target:  5'- ---gUGCagcgugaGGCGCggGCGCGCgucGGCCg -3'
miRNA:   3'- uaaaAUGg------CUGCGuaCGCGUGa--CUGG- -5'
1630 5' -50.2 NC_001347.2 + 81491 0.68 0.994607
Target:  5'- ----cGCuCGGCGgGUGCGCACc-GCCg -3'
miRNA:   3'- uaaaaUG-GCUGCgUACGCGUGacUGG- -5'
1630 5' -50.2 NC_001347.2 + 1912 0.68 0.994607
Target:  5'- ----gGCUGGCGCuggGCGCgguGCUGcCCg -3'
miRNA:   3'- uaaaaUGGCUGCGua-CGCG---UGACuGG- -5'
1630 5' -50.2 NC_001347.2 + 38583 0.68 0.993758
Target:  5'- ----cGCCGACGCGaacgGCucGUACUGcGCCa -3'
miRNA:   3'- uaaaaUGGCUGCGUa---CG--CGUGAC-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.