miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 5' -50.2 NC_001347.2 + 88676 0.68 0.993758
Target:  5'- ----cACUGGCGCcgGCGCGCccugcuggGACg -3'
miRNA:   3'- uaaaaUGGCUGCGuaCGCGUGa-------CUGg -5'
1630 5' -50.2 NC_001347.2 + 63077 0.68 0.992806
Target:  5'- ---cUGCCGGCGgGUGUGgGCUcGGCa -3'
miRNA:   3'- uaaaAUGGCUGCgUACGCgUGA-CUGg -5'
1630 5' -50.2 NC_001347.2 + 200627 0.68 0.992806
Target:  5'- ----cGCCGucgagacccugcACuGCAUGCGCuacCUGACCu -3'
miRNA:   3'- uaaaaUGGC------------UG-CGUACGCGu--GACUGG- -5'
1630 5' -50.2 NC_001347.2 + 2353 0.68 0.992806
Target:  5'- ----cGCgGGCGUGcuggGCGCGCUGGCg -3'
miRNA:   3'- uaaaaUGgCUGCGUa---CGCGUGACUGg -5'
1630 5' -50.2 NC_001347.2 + 63112 0.68 0.991741
Target:  5'- ----gGCCGcCGCGgccGcCGCugUGGCCg -3'
miRNA:   3'- uaaaaUGGCuGCGUa--C-GCGugACUGG- -5'
1630 5' -50.2 NC_001347.2 + 172700 0.68 0.991741
Target:  5'- ----cGCCGACGCugGCGCugcgGCUGaaGCCg -3'
miRNA:   3'- uaaaaUGGCUGCGuaCGCG----UGAC--UGG- -5'
1630 5' -50.2 NC_001347.2 + 105542 0.68 0.991741
Target:  5'- ----gGgCGACGCGcuaUGCGUGCUGccGCCg -3'
miRNA:   3'- uaaaaUgGCUGCGU---ACGCGUGAC--UGG- -5'
1630 5' -50.2 NC_001347.2 + 71716 0.69 0.990555
Target:  5'- ----cGCCGAccCGCGUGUGCcCUG-CCu -3'
miRNA:   3'- uaaaaUGGCU--GCGUACGCGuGACuGG- -5'
1630 5' -50.2 NC_001347.2 + 27347 0.69 0.989239
Target:  5'- -----cCCGACGaCGUG-GUAUUGACCa -3'
miRNA:   3'- uaaaauGGCUGC-GUACgCGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 157260 0.69 0.987784
Target:  5'- ----cACCGGCGCAguuUGCGgCGCaGACg -3'
miRNA:   3'- uaaaaUGGCUGCGU---ACGC-GUGaCUGg -5'
1630 5' -50.2 NC_001347.2 + 96297 0.69 0.987784
Target:  5'- ----cGCCGaguGCGCG-GCGCACaUGAUCa -3'
miRNA:   3'- uaaaaUGGC---UGCGUaCGCGUG-ACUGG- -5'
1630 5' -50.2 NC_001347.2 + 147906 0.69 0.987784
Target:  5'- ----gGCCGugGgugGCGCGgUGGCCu -3'
miRNA:   3'- uaaaaUGGCugCguaCGCGUgACUGG- -5'
1630 5' -50.2 NC_001347.2 + 4204 0.69 0.986182
Target:  5'- ---cUGCCGACGcCGUGCGCGgUuuuuCCg -3'
miRNA:   3'- uaaaAUGGCUGC-GUACGCGUgAcu--GG- -5'
1630 5' -50.2 NC_001347.2 + 25379 0.69 0.986182
Target:  5'- ----cGCCGugGguUG-GCAgCUGGCCg -3'
miRNA:   3'- uaaaaUGGCugCguACgCGU-GACUGG- -5'
1630 5' -50.2 NC_001347.2 + 195953 0.69 0.986182
Target:  5'- ---gUGCCGccaaACGCAU-CGCuCUGGCCg -3'
miRNA:   3'- uaaaAUGGC----UGCGUAcGCGuGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 185039 0.69 0.984423
Target:  5'- aGUUcgGCCGGCGC--GCGCuugaGCUGugCg -3'
miRNA:   3'- -UAAaaUGGCUGCGuaCGCG----UGACugG- -5'
1630 5' -50.2 NC_001347.2 + 136498 0.69 0.984423
Target:  5'- ----gGCCcGCGCAUGCGCcCcggGGCCc -3'
miRNA:   3'- uaaaaUGGcUGCGUACGCGuGa--CUGG- -5'
1630 5' -50.2 NC_001347.2 + 37647 0.7 0.9825
Target:  5'- ----aGCUGACGCuUGCcugaGCACUGAgCg -3'
miRNA:   3'- uaaaaUGGCUGCGuACG----CGUGACUgG- -5'
1630 5' -50.2 NC_001347.2 + 22456 0.7 0.9825
Target:  5'- aAUUUUGCUcaucucacgGugGCGUGCuuGCUGAUCa -3'
miRNA:   3'- -UAAAAUGG---------CugCGUACGcgUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 86277 0.7 0.980403
Target:  5'- -----uUCGGCgGCGUGC-CGCUGACCc -3'
miRNA:   3'- uaaaauGGCUG-CGUACGcGUGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.