miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 5' -50.2 NC_001347.2 + 1912 0.68 0.994607
Target:  5'- ----gGCUGGCGCuggGCGCgguGCUGcCCg -3'
miRNA:   3'- uaaaaUGGCUGCGua-CGCG---UGACuGG- -5'
1630 5' -50.2 NC_001347.2 + 2353 0.68 0.992806
Target:  5'- ----cGCgGGCGUGcuggGCGCGCUGGCg -3'
miRNA:   3'- uaaaaUGgCUGCGUa---CGCGUGACUGg -5'
1630 5' -50.2 NC_001347.2 + 2454 0.66 0.999204
Target:  5'- ----gGCCG-CGCuggGaCGCGCUGcACCu -3'
miRNA:   3'- uaaaaUGGCuGCGua-C-GCGUGAC-UGG- -5'
1630 5' -50.2 NC_001347.2 + 4204 0.69 0.986182
Target:  5'- ---cUGCCGACGcCGUGCGCGgUuuuuCCg -3'
miRNA:   3'- uaaaAUGGCUGC-GUACGCGUgAcu--GG- -5'
1630 5' -50.2 NC_001347.2 + 15050 0.67 0.996024
Target:  5'- ----cGCCGugGUAUGUGCuagGCgUGACg -3'
miRNA:   3'- uaaaaUGGCugCGUACGCG---UG-ACUGg -5'
1630 5' -50.2 NC_001347.2 + 18812 0.66 0.999204
Target:  5'- ---gUGCUG-CGCuggcacgGCGCACUGGgCa -3'
miRNA:   3'- uaaaAUGGCuGCGua-----CGCGUGACUgG- -5'
1630 5' -50.2 NC_001347.2 + 22456 0.7 0.9825
Target:  5'- aAUUUUGCUcaucucacgGugGCGUGCuuGCUGAUCa -3'
miRNA:   3'- -UAAAAUGG---------CugCGUACGcgUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 25379 0.69 0.986182
Target:  5'- ----cGCCGugGguUG-GCAgCUGGCCg -3'
miRNA:   3'- uaaaaUGGCugCguACgCGU-GACUGG- -5'
1630 5' -50.2 NC_001347.2 + 27347 0.69 0.989239
Target:  5'- -----cCCGACGaCGUG-GUAUUGACCa -3'
miRNA:   3'- uaaaauGGCUGC-GUACgCGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 28522 0.67 0.997567
Target:  5'- ---aUACCaACGCAUcauuuuaGCACUGACUg -3'
miRNA:   3'- uaaaAUGGcUGCGUAcg-----CGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 36428 0.66 0.998797
Target:  5'- --gUUGCCGACgGCG-GCGCGgUccgucgaGACCg -3'
miRNA:   3'- uaaAAUGGCUG-CGUaCGCGUgA-------CUGG- -5'
1630 5' -50.2 NC_001347.2 + 37647 0.7 0.9825
Target:  5'- ----aGCUGACGCuUGCcugaGCACUGAgCg -3'
miRNA:   3'- uaaaaUGGCUGCGuACG----CGUGACUgG- -5'
1630 5' -50.2 NC_001347.2 + 38583 0.68 0.993758
Target:  5'- ----cGCCGACGCGaacgGCucGUACUGcGCCa -3'
miRNA:   3'- uaaaaUGGCUGCGUa---CG--CGUGAC-UGG- -5'
1630 5' -50.2 NC_001347.2 + 39523 0.66 0.999028
Target:  5'- ----gGCgCGGCGaCAUGCcguuGCGCUGgGCCa -3'
miRNA:   3'- uaaaaUG-GCUGC-GUACG----CGUGAC-UGG- -5'
1630 5' -50.2 NC_001347.2 + 40449 0.77 0.757278
Target:  5'- uGUUguguCCGACGCugccUGCGCACUG-CCg -3'
miRNA:   3'- -UAAaau-GGCUGCGu---ACGCGUGACuGG- -5'
1630 5' -50.2 NC_001347.2 + 40971 0.67 0.996024
Target:  5'- ----cGCCGcagacuACGCugcuUGCGCACaGGCCc -3'
miRNA:   3'- uaaaaUGGC------UGCGu---ACGCGUGaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 52584 0.71 0.96373
Target:  5'- --aUUACUggGACGCGUgcucucGCGCGCUGcCCg -3'
miRNA:   3'- uaaAAUGG--CUGCGUA------CGCGUGACuGG- -5'
1630 5' -50.2 NC_001347.2 + 63077 0.68 0.992806
Target:  5'- ---cUGCCGGCGgGUGUGgGCUcGGCa -3'
miRNA:   3'- uaaaAUGGCUGCgUACGCgUGA-CUGg -5'
1630 5' -50.2 NC_001347.2 + 63112 0.68 0.991741
Target:  5'- ----gGCCGcCGCGgccGcCGCugUGGCCg -3'
miRNA:   3'- uaaaaUGGCuGCGUa--C-GCGugACUGG- -5'
1630 5' -50.2 NC_001347.2 + 66141 0.67 0.997954
Target:  5'- ----cGCCGACGCGcacaccUGCGaguacCUGAUCg -3'
miRNA:   3'- uaaaaUGGCUGCGU------ACGCgu---GACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.