miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 5' -50.2 NC_001347.2 + 71716 0.69 0.990555
Target:  5'- ----cGCCGAccCGCGUGUGCcCUG-CCu -3'
miRNA:   3'- uaaaaUGGCU--GCGUACGCGuGACuGG- -5'
1630 5' -50.2 NC_001347.2 + 76977 0.66 0.99882
Target:  5'- --cUUGCCGGCGCccgccGUGC-CGgUGACg -3'
miRNA:   3'- uaaAAUGGCUGCG-----UACGcGUgACUGg -5'
1630 5' -50.2 NC_001347.2 + 78674 0.66 0.998288
Target:  5'- ----gGCCGuGCGCAagGCGCGC-GACg -3'
miRNA:   3'- uaaaaUGGC-UGCGUa-CGCGUGaCUGg -5'
1630 5' -50.2 NC_001347.2 + 81491 0.68 0.994607
Target:  5'- ----cGCuCGGCGgGUGCGCACc-GCCg -3'
miRNA:   3'- uaaaaUG-GCUGCgUACGCGUGacUGG- -5'
1630 5' -50.2 NC_001347.2 + 83895 0.66 0.998907
Target:  5'- ----cGCgGACGCGguagcgGCagugucaaguaccagGCGCUGGCCa -3'
miRNA:   3'- uaaaaUGgCUGCGUa-----CG---------------CGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 85945 0.66 0.999204
Target:  5'- ---aUGCCcggcgaGACGCcgGCGCGCgaACCc -3'
miRNA:   3'- uaaaAUGG------CUGCGuaCGCGUGacUGG- -5'
1630 5' -50.2 NC_001347.2 + 86277 0.7 0.980403
Target:  5'- -----uUCGGCgGCGUGC-CGCUGACCc -3'
miRNA:   3'- uaaaauGGCUG-CGUACGcGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 88676 0.68 0.993758
Target:  5'- ----cACUGGCGCcgGCGCGCccugcuggGACg -3'
miRNA:   3'- uaaaaUGGCUGCGuaCGCGUGa-------CUGg -5'
1630 5' -50.2 NC_001347.2 + 92387 0.66 0.998575
Target:  5'- ----cGCCGGCGCcgccuaGCGuCACUG-CCu -3'
miRNA:   3'- uaaaaUGGCUGCGua----CGC-GUGACuGG- -5'
1630 5' -50.2 NC_001347.2 + 93201 0.67 0.997567
Target:  5'- ----cGCCGAgCGCu--CGCGCUGGCg -3'
miRNA:   3'- uaaaaUGGCU-GCGuacGCGUGACUGg -5'
1630 5' -50.2 NC_001347.2 + 96297 0.69 0.987784
Target:  5'- ----cGCCGaguGCGCG-GCGCACaUGAUCa -3'
miRNA:   3'- uaaaaUGGC---UGCGUaCGCGUG-ACUGG- -5'
1630 5' -50.2 NC_001347.2 + 100871 0.66 0.999204
Target:  5'- ----aGCCGAgGCGgcgcgGCGCAgCgccGGCCa -3'
miRNA:   3'- uaaaaUGGCUgCGUa----CGCGU-Ga--CUGG- -5'
1630 5' -50.2 NC_001347.2 + 104528 0.66 0.998288
Target:  5'- ----aACCcGCGCggGCGUgccuccugcauGCUGGCCg -3'
miRNA:   3'- uaaaaUGGcUGCGuaCGCG-----------UGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 105284 0.74 0.892406
Target:  5'- ----cGCCGACGUagGCaaACUGACCa -3'
miRNA:   3'- uaaaaUGGCUGCGuaCGcgUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 105542 0.68 0.991741
Target:  5'- ----gGgCGACGCGcuaUGCGUGCUGccGCCg -3'
miRNA:   3'- uaaaaUgGCUGCGU---ACGCGUGAC--UGG- -5'
1630 5' -50.2 NC_001347.2 + 113436 0.66 0.998575
Target:  5'- ---cUGCCGcaGCGC-UGC-CACUGugCa -3'
miRNA:   3'- uaaaAUGGC--UGCGuACGcGUGACugG- -5'
1630 5' -50.2 NC_001347.2 + 117806 0.66 0.999028
Target:  5'- ----aACgGcCGCucgGCGCACUGcGCCa -3'
miRNA:   3'- uaaaaUGgCuGCGua-CGCGUGAC-UGG- -5'
1630 5' -50.2 NC_001347.2 + 118521 0.67 0.997954
Target:  5'- ----aGCUGGCGCAggcccucgGCGUACUGcagGCUg -3'
miRNA:   3'- uaaaaUGGCUGCGUa-------CGCGUGAC---UGG- -5'
1630 5' -50.2 NC_001347.2 + 126673 0.72 0.934076
Target:  5'- ---gUACCGGCGCGUGguggcuuaCGaCGCUGACg -3'
miRNA:   3'- uaaaAUGGCUGCGUAC--------GC-GUGACUGg -5'
1630 5' -50.2 NC_001347.2 + 136156 0.7 0.972988
Target:  5'- ----aGCgGGCGCA-GCGUGCgGACCg -3'
miRNA:   3'- uaaaaUGgCUGCGUaCGCGUGaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.