miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1630 5' -50.2 NC_001347.2 + 208087 0.66 0.999204
Target:  5'- ---gUACCGcugcCGCAgauggGCGCACcGACg -3'
miRNA:   3'- uaaaAUGGCu---GCGUa----CGCGUGaCUGg -5'
1630 5' -50.2 NC_001347.2 + 207663 0.7 0.980183
Target:  5'- ---aUGCCGGCGCcuaacgguccuuuGUGCGCGCU--CCu -3'
miRNA:   3'- uaaaAUGGCUGCG-------------UACGCGUGAcuGG- -5'
1630 5' -50.2 NC_001347.2 + 206997 0.66 0.998575
Target:  5'- ---gUAUCGAUGCGgcaggcgaaUGCGCagccGCUGACa -3'
miRNA:   3'- uaaaAUGGCUGCGU---------ACGCG----UGACUGg -5'
1630 5' -50.2 NC_001347.2 + 205155 0.66 0.998575
Target:  5'- ----gACuCGGuCGCucgAUGCGCACgGACCc -3'
miRNA:   3'- uaaaaUG-GCU-GCG---UACGCGUGaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 200990 0.66 0.999028
Target:  5'- ----cGCCuGCGaCGUGCGCGacGACCg -3'
miRNA:   3'- uaaaaUGGcUGC-GUACGCGUgaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 200627 0.68 0.992806
Target:  5'- ----cGCCGucgagacccugcACuGCAUGCGCuacCUGACCu -3'
miRNA:   3'- uaaaaUGGC------------UG-CGUACGCGu--GACUGG- -5'
1630 5' -50.2 NC_001347.2 + 199246 0.73 0.928865
Target:  5'- --aUUAuCCGACGCGUGagauCGCGCUcGCCa -3'
miRNA:   3'- uaaAAU-GGCUGCGUAC----GCGUGAcUGG- -5'
1630 5' -50.2 NC_001347.2 + 199024 0.77 0.76697
Target:  5'- ----aGCCGcCGCAgagacgugGCGUACUGGCCg -3'
miRNA:   3'- uaaaaUGGCuGCGUa-------CGCGUGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 197568 0.72 0.934076
Target:  5'- ----gGCCGACgGCA-GCGUGCUGugCu -3'
miRNA:   3'- uaaaaUGGCUG-CGUaCGCGUGACugG- -5'
1630 5' -50.2 NC_001347.2 + 196972 0.68 0.995359
Target:  5'- ----cGCCGACGCccgagacgGCGCGCgu-CCa -3'
miRNA:   3'- uaaaaUGGCUGCGua------CGCGUGacuGG- -5'
1630 5' -50.2 NC_001347.2 + 195953 0.69 0.986182
Target:  5'- ---gUGCCGccaaACGCAU-CGCuCUGGCCg -3'
miRNA:   3'- uaaaAUGGC----UGCGUAcGCGuGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 195614 0.66 0.999266
Target:  5'- ----cGCCGAuuCGUaaucgacaggaggcuGUGCGCGCcGGCCu -3'
miRNA:   3'- uaaaaUGGCU--GCG---------------UACGCGUGaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 194567 0.76 0.804396
Target:  5'- ---cUACCGGCGCuucucgugccUGCGCcagGCUGGCCg -3'
miRNA:   3'- uaaaAUGGCUGCGu---------ACGCG---UGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 193762 0.67 0.997954
Target:  5'- ---gUAgaGGCGCAccgcgagGCGCaACUGACCc -3'
miRNA:   3'- uaaaAUggCUGCGUa------CGCG-UGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 193282 0.66 0.998575
Target:  5'- ---cUugCGGCGCuucgagggcucGUGCGUgucgcuggGCUGGCCc -3'
miRNA:   3'- uaaaAugGCUGCG-----------UACGCG--------UGACUGG- -5'
1630 5' -50.2 NC_001347.2 + 193237 0.67 0.997121
Target:  5'- ----gGCCGACcuguGCGUGCGaCGC-GACUa -3'
miRNA:   3'- uaaaaUGGCUG----CGUACGC-GUGaCUGG- -5'
1630 5' -50.2 NC_001347.2 + 188860 0.66 0.998288
Target:  5'- ---cUGCUGGCGCcgGCGCu---GCCa -3'
miRNA:   3'- uaaaAUGGCUGCGuaCGCGugacUGG- -5'
1630 5' -50.2 NC_001347.2 + 185039 0.69 0.984423
Target:  5'- aGUUcgGCCGGCGC--GCGCuugaGCUGugCg -3'
miRNA:   3'- -UAAaaUGGCUGCGuaCGCG----UGACugG- -5'
1630 5' -50.2 NC_001347.2 + 175240 0.66 0.99882
Target:  5'- uGUUUUGCCGuCGUuUGCGCAaaaagaaggGGCUc -3'
miRNA:   3'- -UAAAAUGGCuGCGuACGCGUga-------CUGG- -5'
1630 5' -50.2 NC_001347.2 + 172700 0.68 0.991741
Target:  5'- ----cGCCGACGCugGCGCugcgGCUGaaGCCg -3'
miRNA:   3'- uaaaaUGGCUGCGuaCGCG----UGAC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.