Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1630 | 5' | -50.2 | NC_001347.2 | + | 136381 | 1.12 | 0.010105 |
Target: 5'- aAUUUUACCGACGCAUGCGCACUGACCg -3' miRNA: 3'- -UAAAAUGGCUGCGUACGCGUGACUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 175240 | 0.66 | 0.99882 |
Target: 5'- uGUUUUGCCGuCGUuUGCGCAaaaagaaggGGCUc -3' miRNA: 3'- -UAAAAUGGCuGCGuACGCGUga-------CUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 36428 | 0.66 | 0.998797 |
Target: 5'- --gUUGCCGACgGCG-GCGCGgUccgucgaGACCg -3' miRNA: 3'- uaaAAUGGCUG-CGUaCGCGUgA-------CUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 206997 | 0.66 | 0.998575 |
Target: 5'- ---gUAUCGAUGCGgcaggcgaaUGCGCagccGCUGACa -3' miRNA: 3'- uaaaAUGGCUGCGU---------ACGCG----UGACUGg -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 205155 | 0.66 | 0.998575 |
Target: 5'- ----gACuCGGuCGCucgAUGCGCACgGACCc -3' miRNA: 3'- uaaaaUG-GCU-GCG---UACGCGUGaCUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 193282 | 0.66 | 0.998575 |
Target: 5'- ---cUugCGGCGCuucgagggcucGUGCGUgucgcuggGCUGGCCc -3' miRNA: 3'- uaaaAugGCUGCG-----------UACGCG--------UGACUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 113436 | 0.66 | 0.998575 |
Target: 5'- ---cUGCCGcaGCGC-UGC-CACUGugCa -3' miRNA: 3'- uaaaAUGGC--UGCGuACGcGUGACugG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 188860 | 0.66 | 0.998288 |
Target: 5'- ---cUGCUGGCGCcgGCGCu---GCCa -3' miRNA: 3'- uaaaAUGGCUGCGuaCGCGugacUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 104528 | 0.66 | 0.998288 |
Target: 5'- ----aACCcGCGCggGCGUgccuccugcauGCUGGCCg -3' miRNA: 3'- uaaaaUGGcUGCGuaCGCG-----------UGACUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 76977 | 0.66 | 0.99882 |
Target: 5'- --cUUGCCGGCGCccgccGUGC-CGgUGACg -3' miRNA: 3'- uaaAAUGGCUGCG-----UACGcGUgACUGg -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 83895 | 0.66 | 0.998907 |
Target: 5'- ----cGCgGACGCGguagcgGCagugucaaguaccagGCGCUGGCCa -3' miRNA: 3'- uaaaaUGgCUGCGUa-----CG---------------CGUGACUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 39523 | 0.66 | 0.999028 |
Target: 5'- ----gGCgCGGCGaCAUGCcguuGCGCUGgGCCa -3' miRNA: 3'- uaaaaUG-GCUGC-GUACG----CGUGAC-UGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 195614 | 0.66 | 0.999266 |
Target: 5'- ----cGCCGAuuCGUaaucgacaggaggcuGUGCGCGCcGGCCu -3' miRNA: 3'- uaaaaUGGCU--GCG---------------UACGCGUGaCUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 208087 | 0.66 | 0.999204 |
Target: 5'- ---gUACCGcugcCGCAgauggGCGCACcGACg -3' miRNA: 3'- uaaaAUGGCu---GCGUa----CGCGUGaCUGg -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 18812 | 0.66 | 0.999204 |
Target: 5'- ---gUGCUG-CGCuggcacgGCGCACUGGgCa -3' miRNA: 3'- uaaaAUGGCuGCGua-----CGCGUGACUgG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 200990 | 0.66 | 0.999028 |
Target: 5'- ----cGCCuGCGaCGUGCGCGacGACCg -3' miRNA: 3'- uaaaaUGGcUGC-GUACGCGUgaCUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 100871 | 0.66 | 0.999204 |
Target: 5'- ----aGCCGAgGCGgcgcgGCGCAgCgccGGCCa -3' miRNA: 3'- uaaaaUGGCUgCGUa----CGCGU-Ga--CUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 2454 | 0.66 | 0.999204 |
Target: 5'- ----gGCCG-CGCuggGaCGCGCUGcACCu -3' miRNA: 3'- uaaaaUGGCuGCGua-C-GCGUGAC-UGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 150249 | 0.66 | 0.999204 |
Target: 5'- ----gGCCGGgGcCAUcGCGCgGCUGGCUa -3' miRNA: 3'- uaaaaUGGCUgC-GUA-CGCG-UGACUGG- -5' |
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1630 | 5' | -50.2 | NC_001347.2 | + | 117806 | 0.66 | 0.999028 |
Target: 5'- ----aACgGcCGCucgGCGCACUGcGCCa -3' miRNA: 3'- uaaaaUGgCuGCGua-CGCGUGAC-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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