miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16300 5' -57.6 NC_004084.1 + 51617 0.66 0.616696
Target:  5'- -aCGuCGACGGCGcGGGAGC-UGAUc- -3'
miRNA:   3'- gaGCuGCUGUCGC-CCCUCGcGCUAua -5'
16300 5' -57.6 NC_004084.1 + 16858 0.66 0.605889
Target:  5'- gUCGAUGAUcgcaAGUGGGaucucGAGCGCGGc-- -3'
miRNA:   3'- gAGCUGCUG----UCGCCC-----CUCGCGCUaua -5'
16300 5' -57.6 NC_004084.1 + 37576 0.66 0.573632
Target:  5'- aCUCGuCGACgAGCcgaggcacucucGGGGAGCGCu---- -3'
miRNA:   3'- -GAGCuGCUG-UCG------------CCCCUCGCGcuaua -5'
16300 5' -57.6 NC_004084.1 + 26862 0.67 0.541791
Target:  5'- uUCGACGAUuGUcGGuAGCGCGAUGUc -3'
miRNA:   3'- gAGCUGCUGuCGcCCcUCGCGCUAUA- -5'
16300 5' -57.6 NC_004084.1 + 28928 0.67 0.520892
Target:  5'- -gCGACGuCGGCcucGGGAGCGCGu--- -3'
miRNA:   3'- gaGCUGCuGUCGc--CCCUCGCGCuaua -5'
16300 5' -57.6 NC_004084.1 + 47031 0.67 0.51056
Target:  5'- aUCGAUGACGauGcCGGGGAGUGCc---- -3'
miRNA:   3'- gAGCUGCUGU--C-GCCCCUCGCGcuaua -5'
16300 5' -57.6 NC_004084.1 + 46197 0.68 0.479104
Target:  5'- cCUCGACGAgcUGGCcgaguacuaucccGGGGAGC-CGAUAg -3'
miRNA:   3'- -GAGCUGCU--GUCG-------------CCCCUCGcGCUAUa -5'
16300 5' -57.6 NC_004084.1 + 6597 0.69 0.394647
Target:  5'- -gUGGCGACAGuCGGcGGGCGCGGa-- -3'
miRNA:   3'- gaGCUGCUGUC-GCCcCUCGCGCUaua -5'
16300 5' -57.6 NC_004084.1 + 15034 0.7 0.384013
Target:  5'- gUCGACGGCcacucgaGGUGGugcuccuGGAGCGUGAUGUu -3'
miRNA:   3'- gAGCUGCUG-------UCGCC-------CCUCGCGCUAUA- -5'
16300 5' -57.6 NC_004084.1 + 30583 0.7 0.351616
Target:  5'- gUCGGCGAaccggAGCGGGGugagguGGCGCGGg-- -3'
miRNA:   3'- gAGCUGCUg----UCGCCCC------UCGCGCUaua -5'
16300 5' -57.6 NC_004084.1 + 29432 0.72 0.300086
Target:  5'- gUCGACGGCGagcuucaccgcgaacGCGGcGuGGGCGCGAUGc -3'
miRNA:   3'- gAGCUGCUGU---------------CGCC-C-CUCGCGCUAUa -5'
16300 5' -57.6 NC_004084.1 + 17556 0.73 0.243206
Target:  5'- gUCGACGACAGC--GGAGCGUGGg-- -3'
miRNA:   3'- gAGCUGCUGUCGccCCUCGCGCUaua -5'
16300 5' -57.6 NC_004084.1 + 34850 1.05 0.001277
Target:  5'- uCUCGACGACAGCGGGGAGCGCGAUAUc -3'
miRNA:   3'- -GAGCUGCUGUCGCCCCUCGCGCUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.