miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16301 3' -51.8 NC_004084.1 + 43494 0.66 0.919558
Target:  5'- gGAUCUucgACCAGAucgagGCGAaCCCG-GAGCa -3'
miRNA:   3'- -CUGGA---UGGUCU-----UGCUaGGGCuCUUGg -5'
16301 3' -51.8 NC_004084.1 + 53096 0.66 0.919558
Target:  5'- aGACCU-CCAGGAgGcaCUCGAcgGAGCCg -3'
miRNA:   3'- -CUGGAuGGUCUUgCuaGGGCU--CUUGG- -5'
16301 3' -51.8 NC_004084.1 + 12558 0.66 0.918943
Target:  5'- uGACCgaugugguagcgaUACCAGGGCGAgagguucgacUCCCaGGcACCg -3'
miRNA:   3'- -CUGG-------------AUGGUCUUGCU----------AGGGcUCuUGG- -5'
16301 3' -51.8 NC_004084.1 + 45206 0.66 0.917704
Target:  5'- uGCCUuCCAGAucagucccucGaacauccuggaucuCGAUCCgGAGAACCc -3'
miRNA:   3'- cUGGAuGGUCU----------U--------------GCUAGGgCUCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 23369 0.66 0.91328
Target:  5'- cGCCUGCCGGuaucaGGCGAUCaucgaUGAGAugAUCg -3'
miRNA:   3'- cUGGAUGGUC-----UUGCUAGg----GCUCU--UGG- -5'
16301 3' -51.8 NC_004084.1 + 48230 0.66 0.90672
Target:  5'- uACCcACUcgugaacgucgAGGACuggGAUUCCGAGAACCu -3'
miRNA:   3'- cUGGaUGG-----------UCUUG---CUAGGGCUCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 52703 0.66 0.90672
Target:  5'- gGACCUcgGCCcGAGCGAcgUCCuCGAacucaacccagcGGACCu -3'
miRNA:   3'- -CUGGA--UGGuCUUGCU--AGG-GCU------------CUUGG- -5'
16301 3' -51.8 NC_004084.1 + 41599 0.66 0.90672
Target:  5'- uGCCUggaGCCAucucGAugGGUCCuCGAGGaaauucaacGCCg -3'
miRNA:   3'- cUGGA---UGGU----CUugCUAGG-GCUCU---------UGG- -5'
16301 3' -51.8 NC_004084.1 + 42953 0.66 0.90672
Target:  5'- aGugCgacACCAGuucccGCGAgugucCCCGAGAGCg -3'
miRNA:   3'- -CugGa--UGGUCu----UGCUa----GGGCUCUUGg -5'
16301 3' -51.8 NC_004084.1 + 7539 0.66 0.89277
Target:  5'- aGCCgauCCAGGACGGcaUCGAGAagaacGCCg -3'
miRNA:   3'- cUGGau-GGUCUUGCUagGGCUCU-----UGG- -5'
16301 3' -51.8 NC_004084.1 + 49799 0.66 0.89277
Target:  5'- cGACg-GCCAGAuCGGcCUCGAGGACa -3'
miRNA:   3'- -CUGgaUGGUCUuGCUaGGGCUCUUGg -5'
16301 3' -51.8 NC_004084.1 + 29373 0.66 0.885387
Target:  5'- cGGCCUGCCagcAGAACGAgcaacggUCGGGcGGCCa -3'
miRNA:   3'- -CUGGAUGG---UCUUGCUag-----GGCUC-UUGG- -5'
16301 3' -51.8 NC_004084.1 + 18104 0.66 0.885387
Target:  5'- cGAUCgaUGCCAGGacagcgguucGCGAUCCgGAuGGACUg -3'
miRNA:   3'- -CUGG--AUGGUCU----------UGCUAGGgCU-CUUGG- -5'
16301 3' -51.8 NC_004084.1 + 43985 0.66 0.885387
Target:  5'- cGCuCUACCGcGAACug-CCCGAGcuGACCg -3'
miRNA:   3'- cUG-GAUGGU-CUUGcuaGGGCUC--UUGG- -5'
16301 3' -51.8 NC_004084.1 + 15547 0.67 0.877739
Target:  5'- cGCCUGCCGGAGugccaGAUCgCGuucgaacgcGAGCCg -3'
miRNA:   3'- cUGGAUGGUCUUg----CUAGgGCu--------CUUGG- -5'
16301 3' -51.8 NC_004084.1 + 45505 0.67 0.876959
Target:  5'- uACCUgGCCGGGcCGGUCggccacuCCGAGGACg -3'
miRNA:   3'- cUGGA-UGGUCUuGCUAG-------GGCUCUUGg -5'
16301 3' -51.8 NC_004084.1 + 22695 0.67 0.861671
Target:  5'- -uUCUGCCAccuCGcgCCCuGAGAACCu -3'
miRNA:   3'- cuGGAUGGUcuuGCuaGGG-CUCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 23288 0.67 0.861671
Target:  5'- cGGCCgACCAgucccGAGCGAgcgcgugaCCGAGAGCg -3'
miRNA:   3'- -CUGGaUGGU-----CUUGCUag------GGCUCUUGg -5'
16301 3' -51.8 NC_004084.1 + 57946 0.67 0.853265
Target:  5'- cGCCUGCCAGcagcacGCGGuuuUCCauacaGAGGACUg -3'
miRNA:   3'- cUGGAUGGUCu-----UGCU---AGGg----CUCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 41053 0.67 0.844623
Target:  5'- cGGCCcgauCCAGaAGCGGUCCgCGAGuACg -3'
miRNA:   3'- -CUGGau--GGUC-UUGCUAGG-GCUCuUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.