miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16301 3' -51.8 NC_004084.1 + 7249 0.68 0.836648
Target:  5'- cGACUggguCCAGGACGAgagcgacaccgacaCCGAGAucACCa -3'
miRNA:   3'- -CUGGau--GGUCUUGCUag------------GGCUCU--UGG- -5'
16301 3' -51.8 NC_004084.1 + 6386 0.69 0.788308
Target:  5'- -cUCUACgAGAGCG---CCGAGGACCg -3'
miRNA:   3'- cuGGAUGgUCUUGCuagGGCUCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 18823 0.69 0.788308
Target:  5'- cGAC--GCCAGAcaaGCGcgCCCG-GGACCu -3'
miRNA:   3'- -CUGgaUGGUCU---UGCuaGGGCuCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 35461 0.68 0.814532
Target:  5'- uGACaucgACCAGGagcaggucgaggcgGCGAUCgCCGAGAucccgACCa -3'
miRNA:   3'- -CUGga--UGGUCU--------------UGCUAG-GGCUCU-----UGG- -5'
16301 3' -51.8 NC_004084.1 + 43750 0.68 0.826661
Target:  5'- gGACCcgGCCGGGACGcUCgCGGGcAUCg -3'
miRNA:   3'- -CUGGa-UGGUCUUGCuAGgGCUCuUGG- -5'
16301 3' -51.8 NC_004084.1 + 32040 0.68 0.826661
Target:  5'- gGACCU-CUAcGACGAUCCCGAacGCg -3'
miRNA:   3'- -CUGGAuGGUcUUGCUAGGGCUcuUGg -5'
16301 3' -51.8 NC_004084.1 + 47837 0.68 0.826661
Target:  5'- cGCCaACCAGGcCGGUCCCGucucGAucgacaGCCa -3'
miRNA:   3'- cUGGaUGGUCUuGCUAGGGCu---CU------UGG- -5'
16301 3' -51.8 NC_004084.1 + 1521 0.68 0.835751
Target:  5'- gGACCUcuacACCGcugucGACGAUCCCuGGAACa -3'
miRNA:   3'- -CUGGA----UGGUc----UUGCUAGGGcUCUUGg -5'
16301 3' -51.8 NC_004084.1 + 12509 0.68 0.835751
Target:  5'- cGGCCgagaUGCUcGAGCugGAUCUCGAGAGCUu -3'
miRNA:   3'- -CUGG----AUGGuCUUG--CUAGGGCUCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 980 0.69 0.788308
Target:  5'- uGCC-ACCGGGACGG-CCUGAGAcgACg -3'
miRNA:   3'- cUGGaUGGUCUUGCUaGGGCUCU--UGg -5'
16301 3' -51.8 NC_004084.1 + 21610 0.69 0.778276
Target:  5'- gGACCgucUCGGGACGAUCUuCGAcuuGGACCg -3'
miRNA:   3'- -CUGGau-GGUCUUGCUAGG-GCU---CUUGG- -5'
16301 3' -51.8 NC_004084.1 + 44463 0.69 0.757759
Target:  5'- cGACCgguuCCGGAGCGAgUuuGAGGcucGCCu -3'
miRNA:   3'- -CUGGau--GGUCUUGCUaGggCUCU---UGG- -5'
16301 3' -51.8 NC_004084.1 + 372 0.73 0.560516
Target:  5'- cGCCUACCGGGAgaacuucauCGAUCaccucaCCGAGAGCg -3'
miRNA:   3'- cUGGAUGGUCUU---------GCUAG------GGCUCUUGg -5'
16301 3' -51.8 NC_004084.1 + 9674 0.72 0.626904
Target:  5'- cGAUCU-CCu--ACGAUCCCGAGGAUg -3'
miRNA:   3'- -CUGGAuGGucuUGCUAGGGCUCUUGg -5'
16301 3' -51.8 NC_004084.1 + 50787 0.72 0.626904
Target:  5'- aGACCgACgAG-ACGAaCCCGGGAAUCg -3'
miRNA:   3'- -CUGGaUGgUCuUGCUaGGGCUCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 47184 0.71 0.649173
Target:  5'- uGCUgACCGGGACGGcuUCUCGAGGccACCg -3'
miRNA:   3'- cUGGaUGGUCUUGCU--AGGGCUCU--UGG- -5'
16301 3' -51.8 NC_004084.1 + 49376 0.71 0.649173
Target:  5'- gGGCa-ACCAGAGCGAguuccaugcccUCuCCGAGGACUa -3'
miRNA:   3'- -CUGgaUGGUCUUGCU-----------AG-GGCUCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 38365 0.7 0.711988
Target:  5'- uGCCUacGCCGGAucgagcgcgggaagGCGA--CCGAGGACCa -3'
miRNA:   3'- cUGGA--UGGUCU--------------UGCUagGGCUCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 37227 0.7 0.715241
Target:  5'- -uCCUACCGGGGCGAgaagaaccgcgUCCCggcgcucgucGAGGACUc -3'
miRNA:   3'- cuGGAUGGUCUUGCU-----------AGGG----------CUCUUGG- -5'
16301 3' -51.8 NC_004084.1 + 5356 0.7 0.736715
Target:  5'- cGGCgaggACUGGGACGAUCUCGAcgucGAACCu -3'
miRNA:   3'- -CUGga--UGGUCUUGCUAGGGCU----CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.