miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 3' -51.2 NC_004084.1 + 7286 0.66 0.920018
Target:  5'- ---gUUCGGGAucgcccaagcguACUCCUGGACGaGCu- -3'
miRNA:   3'- cuuaAGGUCUU------------UGAGGACCUGC-CGcg -5'
16302 3' -51.2 NC_004084.1 + 54498 0.66 0.907036
Target:  5'- cGGUUCgAGGacgccuucgacGACUacaaccggcaCCUGGACGGCGa -3'
miRNA:   3'- cUUAAGgUCU-----------UUGA----------GGACCUGCCGCg -5'
16302 3' -51.2 NC_004084.1 + 15045 0.66 0.902917
Target:  5'- ---cUCgAGGugguGCUCCUGGAgcgugauguucgacuCGGCGUu -3'
miRNA:   3'- cuuaAGgUCUu---UGAGGACCU---------------GCCGCG- -5'
16302 3' -51.2 NC_004084.1 + 50878 0.66 0.900115
Target:  5'- --cUUCUcGAuGCcgUCCUGGAUGGCuGCa -3'
miRNA:   3'- cuuAAGGuCUuUG--AGGACCUGCCG-CG- -5'
16302 3' -51.2 NC_004084.1 + 15189 0.66 0.900115
Target:  5'- cGGAUUCCAGcuGGACUcgcaCCaGGAgauCGGCGUc -3'
miRNA:   3'- -CUUAAGGUC--UUUGA----GGaCCU---GCCGCG- -5'
16302 3' -51.2 NC_004084.1 + 19712 0.67 0.885428
Target:  5'- --cUUUCGGgcACUCCgGGuuGGUGCa -3'
miRNA:   3'- cuuAAGGUCuuUGAGGaCCugCCGCG- -5'
16302 3' -51.2 NC_004084.1 + 49910 0.67 0.877673
Target:  5'- ----cUCGGAGAUUCCUucgcuggauccGG-CGGCGCa -3'
miRNA:   3'- cuuaaGGUCUUUGAGGA-----------CCuGCCGCG- -5'
16302 3' -51.2 NC_004084.1 + 27514 0.67 0.852836
Target:  5'- --cUUCCAGGAggaccacgGCUaCCUGGAUGGaccgguggcCGCg -3'
miRNA:   3'- cuuAAGGUCUU--------UGA-GGACCUGCC---------GCG- -5'
16302 3' -51.2 NC_004084.1 + 54733 0.68 0.825813
Target:  5'- ----aCCGGGAACguacgccagCCcGGugGGCGUg -3'
miRNA:   3'- cuuaaGGUCUUUGa--------GGaCCugCCGCG- -5'
16302 3' -51.2 NC_004084.1 + 9469 0.69 0.786836
Target:  5'- uGggUUgaGGAGACUcaCCUGGAgcugaagccCGGCGCc -3'
miRNA:   3'- -CuuAAggUCUUUGA--GGACCU---------GCCGCG- -5'
16302 3' -51.2 NC_004084.1 + 36222 0.7 0.7344
Target:  5'- ---cUCCGGu--CUCCUcgagggcaaccGGugGGCGCu -3'
miRNA:   3'- cuuaAGGUCuuuGAGGA-----------CCugCCGCG- -5'
16302 3' -51.2 NC_004084.1 + 50803 0.71 0.645514
Target:  5'- ----cCCGGGAAUcgUCCUGGACccguucgcgGGCGCc -3'
miRNA:   3'- cuuaaGGUCUUUG--AGGACCUG---------CCGCG- -5'
16302 3' -51.2 NC_004084.1 + 29299 0.73 0.533715
Target:  5'- cGGcgUCUguGGGuacGCUaCCUGGAUGGCGCg -3'
miRNA:   3'- -CUuaAGG--UCUu--UGA-GGACCUGCCGCG- -5'
16302 3' -51.2 NC_004084.1 + 30668 0.75 0.459593
Target:  5'- -----gCGGAGuACUCCUGGugGGCGg -3'
miRNA:   3'- cuuaagGUCUU-UGAGGACCugCCGCg -5'
16302 3' -51.2 NC_004084.1 + 3716 0.76 0.410137
Target:  5'- ---aUCCGGAAGCguaUGGACGaGCGCg -3'
miRNA:   3'- cuuaAGGUCUUUGaggACCUGC-CGCG- -5'
16302 3' -51.2 NC_004084.1 + 641 0.76 0.391302
Target:  5'- ---gUCguGGAGCUCCUcGACGGCGUc -3'
miRNA:   3'- cuuaAGguCUUUGAGGAcCUGCCGCG- -5'
16302 3' -51.2 NC_004084.1 + 1122 0.83 0.147379
Target:  5'- ---gUCgAGGAGgUCCUGGAUGGCGCg -3'
miRNA:   3'- cuuaAGgUCUUUgAGGACCUGCCGCG- -5'
16302 3' -51.2 NC_004084.1 + 32918 1.03 0.007606
Target:  5'- cGAAUUCCAGAAACUCC-GGACGGCGCg -3'
miRNA:   3'- -CUUAAGGUCUUUGAGGaCCUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.