miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 34722 0.66 0.580752
Target:  5'- gGGCGUCGCCgguuCGCGAugAgCUCGcGGaCCa -3'
miRNA:   3'- aCUGCGGCGG----GCGCU--UgGAGCuUC-GG- -5'
16302 5' -58.8 NC_004084.1 + 13447 0.66 0.580752
Target:  5'- gGugGCgUGaCCUGCGAACCgCGGA-CCa -3'
miRNA:   3'- aCugCG-GC-GGGCGCUUGGaGCUUcGG- -5'
16302 5' -58.8 NC_004084.1 + 52718 0.66 0.580752
Target:  5'- cGACGUCcucgaacucaaCCCaGCGGACCUCGAcGaCCu -3'
miRNA:   3'- aCUGCGGc----------GGG-CGCUUGGAGCUuC-GG- -5'
16302 5' -58.8 NC_004084.1 + 8184 0.66 0.580752
Target:  5'- cGACGCCucagagugggGUUCGCGGaugGCgUCGAGGUUg -3'
miRNA:   3'- aCUGCGG----------CGGGCGCU---UGgAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 34990 0.66 0.580752
Target:  5'- --uCGCCGCCUGCGugUCagCGAucAGCUg -3'
miRNA:   3'- acuGCGGCGGGCGCuuGGa-GCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 16949 0.66 0.580752
Target:  5'- gGGCGUCGCgaCGuCGGGuCUUCGAGcGCCu -3'
miRNA:   3'- aCUGCGGCGg-GC-GCUU-GGAGCUU-CGG- -5'
16302 5' -58.8 NC_004084.1 + 22837 0.66 0.580752
Target:  5'- cGA-GCCGCCgagGCGAACgUCGuuguaGAGCUg -3'
miRNA:   3'- aCUgCGGCGGg--CGCUUGgAGC-----UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 47905 0.66 0.580752
Target:  5'- cGACgGUCGCuCCGCGAgguGCCgcgCGAuccagGGCa -3'
miRNA:   3'- aCUG-CGGCG-GGCGCU---UGGa--GCU-----UCGg -5'
16302 5' -58.8 NC_004084.1 + 2218 0.66 0.574441
Target:  5'- aUGuccuCGCCGCUCGCuucggccagcgcggaGAucuCCUCGGucuuGCCg -3'
miRNA:   3'- -ACu---GCGGCGGGCG---------------CUu--GGAGCUu---CGG- -5'
16302 5' -58.8 NC_004084.1 + 51221 0.66 0.570242
Target:  5'- -cGCGCUGCUCGCGAucccACuCUCGGuacugauaggcGGCUu -3'
miRNA:   3'- acUGCGGCGGGCGCU----UG-GAGCU-----------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 55350 0.66 0.570242
Target:  5'- cGACgaGCgGCCCGuCGAcgaguuCCUCGAGGgUg -3'
miRNA:   3'- aCUG--CGgCGGGC-GCUu-----GGAGCUUCgG- -5'
16302 5' -58.8 NC_004084.1 + 30337 0.66 0.570242
Target:  5'- uUGACaugaGCaa-CCGCG-ACCUCGAggaGGCCg -3'
miRNA:   3'- -ACUG----CGgcgGGCGCuUGGAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 53374 0.66 0.570242
Target:  5'- cGAaGUCGUCCGUGuagucgccauCCUCGAucAGCCc -3'
miRNA:   3'- aCUgCGGCGGGCGCuu--------GGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 10535 0.66 0.570242
Target:  5'- cGACGuuGCCgagccaGCGGACgaguagCUCGggGUg -3'
miRNA:   3'- aCUGCggCGGg-----CGCUUG------GAGCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 57069 0.66 0.570242
Target:  5'- cGACGguCCGCCCGUGGucuuugACCaUCGGGacgcagaccGCCu -3'
miRNA:   3'- aCUGC--GGCGGGCGCU------UGG-AGCUU---------CGG- -5'
16302 5' -58.8 NC_004084.1 + 9907 0.66 0.569194
Target:  5'- aGGCGUaCGUCCaaGAcaagagcGCCUCGAcgAGCCu -3'
miRNA:   3'- aCUGCG-GCGGGcgCU-------UGGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 28188 0.66 0.55978
Target:  5'- cGACGUCG-CCGCGGacaucGCCUCc-GGUCa -3'
miRNA:   3'- aCUGCGGCgGGCGCU-----UGGAGcuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 36946 0.66 0.55978
Target:  5'- cGAuCGCCGCCCuCGAGgg-CG-AGCCg -3'
miRNA:   3'- aCU-GCGGCGGGcGCUUggaGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 29148 0.66 0.55978
Target:  5'- cUGGCGCUGCCgGgCGuacAACCUgGuucGAGCCn -3'
miRNA:   3'- -ACUGCGGCGGgC-GC---UUGGAgC---UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 31283 0.66 0.55978
Target:  5'- cGugGCCGgUCGCGggUCccuaUCGuugggguAGCCc -3'
miRNA:   3'- aCugCGGCgGGCGCuuGG----AGCu------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.