miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 44242 0.66 0.535931
Target:  5'- cGGCucacUCGCuuGuCGAGCCUCGAuaccguguucauccAGCCa -3'
miRNA:   3'- aCUGc---GGCGggC-GCUUGGAGCU--------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 10535 0.66 0.570242
Target:  5'- cGACGuuGCCgagccaGCGGACgaguagCUCGggGUg -3'
miRNA:   3'- aCUGCggCGGg-----CGCUUG------GAGCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 29148 0.66 0.55978
Target:  5'- cUGGCGCUGCCgGgCGuacAACCUgGuucGAGCCn -3'
miRNA:   3'- -ACUGCGGCGGgC-GC---UUGGAgC---UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 8072 0.66 0.54937
Target:  5'- aGAUGUCGCCCGgGuucuuGCCguUCGGguGGCa -3'
miRNA:   3'- aCUGCGGCGGGCgCu----UGG--AGCU--UCGg -5'
16302 5' -58.8 NC_004084.1 + 34990 0.66 0.580752
Target:  5'- --uCGCCGCCUGCGugUCagCGAucAGCUg -3'
miRNA:   3'- acuGCGGCGGGCGCuuGGa-GCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 16949 0.66 0.580752
Target:  5'- gGGCGUCGCgaCGuCGGGuCUUCGAGcGCCu -3'
miRNA:   3'- aCUGCGGCGg-GC-GCUU-GGAGCUU-CGG- -5'
16302 5' -58.8 NC_004084.1 + 9452 0.66 0.555609
Target:  5'- gGACGCCGUagucggcggcaUCGUGuuugucccaggucACCUCGuAGCCa -3'
miRNA:   3'- aCUGCGGCG-----------GGCGCu------------UGGAGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 22837 0.66 0.580752
Target:  5'- cGA-GCCGCCgagGCGAACgUCGuuguaGAGCUg -3'
miRNA:   3'- aCUgCGGCGGg--CGCUUGgAGC-----UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 55350 0.66 0.570242
Target:  5'- cGACgaGCgGCCCGuCGAcgaguuCCUCGAGGgUg -3'
miRNA:   3'- aCUG--CGgCGGGC-GCUu-----GGAGCUUCgG- -5'
16302 5' -58.8 NC_004084.1 + 53662 0.66 0.54937
Target:  5'- cGGCGuUCGCCC-CG-AUCUCGAucAGCUg -3'
miRNA:   3'- aCUGC-GGCGGGcGCuUGGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 52718 0.66 0.580752
Target:  5'- cGACGUCcucgaacucaaCCCaGCGGACCUCGAcGaCCu -3'
miRNA:   3'- aCUGCGGc----------GGG-CGCUUGGAGCUuC-GG- -5'
16302 5' -58.8 NC_004084.1 + 7325 0.66 0.539023
Target:  5'- --uCGCUGCUCGaGGACUUCGAucGCCc -3'
miRNA:   3'- acuGCGGCGGGCgCUUGGAGCUu-CGG- -5'
16302 5' -58.8 NC_004084.1 + 12981 0.66 0.543154
Target:  5'- cGGCGUCagacauccccaucaCCCGUGAACgagUCGAGGCCc -3'
miRNA:   3'- aCUGCGGc-------------GGGCGCUUGg--AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 50258 0.66 0.54937
Target:  5'- cGuCGCCGUUgGCGGcgagguCCUCGAcgucuGCCg -3'
miRNA:   3'- aCuGCGGCGGgCGCUu-----GGAGCUu----CGG- -5'
16302 5' -58.8 NC_004084.1 + 28846 0.66 0.54937
Target:  5'- cGACGCCcaCCCgGCGAuggcCCUCaacGGCCu -3'
miRNA:   3'- aCUGCGGc-GGG-CGCUu---GGAGcu-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 4452 0.67 0.532846
Target:  5'- cGACG-CGCCCGaCuggacgaucgaguucGAGCUggCGAAGCCc -3'
miRNA:   3'- aCUGCgGCGGGC-G---------------CUUGGa-GCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 31075 0.67 0.478548
Target:  5'- aGACGUCGUccggcccaCCGCGucCCUCGAacgugaacGGUCg -3'
miRNA:   3'- aCUGCGGCG--------GGCGCuuGGAGCU--------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 41478 0.67 0.488408
Target:  5'- cGACGUcgcgaCGCCCGcCGAugC-CGAaccgcacccGGCCa -3'
miRNA:   3'- aCUGCG-----GCGGGC-GCUugGaGCU---------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 9720 0.67 0.488408
Target:  5'- gGACGUCGCCgGa----UUCGAGGCCc -3'
miRNA:   3'- aCUGCGGCGGgCgcuugGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 43982 0.67 0.478548
Target:  5'- cGACGCuCuaCCGCGAACUgccCG-AGCUg -3'
miRNA:   3'- aCUGCG-GcgGGCGCUUGGa--GCuUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.