miRNA display CGI


Results 61 - 80 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 28992 0.67 0.478548
Target:  5'- cGACGUCGgccugaugaCCGCGAugCa-GGAGCCc -3'
miRNA:   3'- aCUGCGGCg--------GGCGCUugGagCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 29399 0.67 0.518534
Target:  5'- gUGAUGCCGCCCuCGAuggGCUccugcaUCGcGGUCa -3'
miRNA:   3'- -ACUGCGGCGGGcGCU---UGG------AGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 28074 0.68 0.421601
Target:  5'- cGACGCCGUCgGCc-ACCUCGccgacGGUCa -3'
miRNA:   3'- aCUGCGGCGGgCGcuUGGAGCu----UCGG- -5'
16302 5' -58.8 NC_004084.1 + 57828 0.68 0.467816
Target:  5'- uUGACGUCGgCCGUc-AUCUCGAguuccucGGCCg -3'
miRNA:   3'- -ACUGCGGCgGGCGcuUGGAGCU-------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 29350 0.68 0.468787
Target:  5'- cGACGCC-CCCgaGCGGGCggUCGcGGCCu -3'
miRNA:   3'- aCUGCGGcGGG--CGCUUGg-AGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 17680 0.68 0.459129
Target:  5'- gGGCGaCGCUgGuCGAGCUUCGAgacgcuacugAGCCg -3'
miRNA:   3'- aCUGCgGCGGgC-GCUUGGAGCU----------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 31621 0.68 0.459129
Target:  5'- gGACGCCGUCuUGCGAuuuuuCCUCGuggaAGGUa -3'
miRNA:   3'- aCUGCGGCGG-GCGCUu----GGAGC----UUCGg -5'
16302 5' -58.8 NC_004084.1 + 40061 0.68 0.459129
Target:  5'- aGcCGUCGacCCCGCGAACgUCGGgauGGUCg -3'
miRNA:   3'- aCuGCGGC--GGGCGCUUGgAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 47747 0.68 0.459129
Target:  5'- cGGuCGCUGCCCgGCGAucgcaaacgGCaCUCGgcGCUg -3'
miRNA:   3'- aCU-GCGGCGGG-CGCU---------UG-GAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 23275 0.68 0.468787
Target:  5'- gGAUGUacCCCGaGGACCUCGAcGCCc -3'
miRNA:   3'- aCUGCGgcGGGCgCUUGGAGCUuCGG- -5'
16302 5' -58.8 NC_004084.1 + 43377 0.68 0.459129
Target:  5'- cGugGUCGUacuaCGaauCGAACCUCGAGGUUc -3'
miRNA:   3'- aCugCGGCGg---GC---GCUUGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 32625 0.68 0.43081
Target:  5'- cGACGUCGCUCGCc-ACCUgGAGGg- -3'
miRNA:   3'- aCUGCGGCGGGCGcuUGGAgCUUCgg -5'
16302 5' -58.8 NC_004084.1 + 24177 0.68 0.421601
Target:  5'- cGACGCU-CCCGCacACCUaCGAcgacAGCCg -3'
miRNA:   3'- aCUGCGGcGGGCGcuUGGA-GCU----UCGG- -5'
16302 5' -58.8 NC_004084.1 + 12420 0.68 0.421601
Target:  5'- gGAUGCCaaCCGCG--UCUCGAAcGCCg -3'
miRNA:   3'- aCUGCGGcgGGCGCuuGGAGCUU-CGG- -5'
16302 5' -58.8 NC_004084.1 + 48676 0.68 0.421601
Target:  5'- cGAagGUCGCgaCGUGGGagauCCUCGAAGCCg -3'
miRNA:   3'- aCUg-CGGCGg-GCGCUU----GGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 19021 0.68 0.43081
Target:  5'- cGACGCCgaGCUCGaacuGGACUUCGAAaCCa -3'
miRNA:   3'- aCUGCGG--CGGGCg---CUUGGAGCUUcGG- -5'
16302 5' -58.8 NC_004084.1 + 28419 0.68 0.440137
Target:  5'- cUGACGUCGUCaccaGCGA-CCaggUCGAcGCCg -3'
miRNA:   3'- -ACUGCGGCGGg---CGCUuGG---AGCUuCGG- -5'
16302 5' -58.8 NC_004084.1 + 2545 0.68 0.449577
Target:  5'- gGugGCCG-CUGCGGACCUcuuccgCGAAGaCg -3'
miRNA:   3'- aCugCGGCgGGCGCUUGGA------GCUUCgG- -5'
16302 5' -58.8 NC_004084.1 + 31508 0.68 0.456252
Target:  5'- aGuCGCCGCCuccacuauCGCGAuggaugccgcgaucGCCUCGGAGg- -3'
miRNA:   3'- aCuGCGGCGG--------GCGCU--------------UGGAGCUUCgg -5'
16302 5' -58.8 NC_004084.1 + 30575 0.68 0.468787
Target:  5'- cGGCGaCgGUCgGCGAACCggagCGggGUg -3'
miRNA:   3'- aCUGC-GgCGGgCGCUUGGa---GCuuCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.