miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 32951 1.12 0.000345
Target:  5'- cUGACGCCGCCCGCGAACCUCGAAGCCa -3'
miRNA:   3'- -ACUGCGGCGGGCGCUUGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 45452 0.95 0.005846
Target:  5'- cUGACGCCGCCCGCGAGa-UCGAAGCCg -3'
miRNA:   3'- -ACUGCGGCGGGCGCUUggAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 1500 0.84 0.03763
Target:  5'- aGACGUCGCCCuCGAG-CUCGAAGCCg -3'
miRNA:   3'- aCUGCGGCGGGcGCUUgGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 31207 0.81 0.05745
Target:  5'- cGACGUCG-UCGCGAACCUCGAGGUa -3'
miRNA:   3'- aCUGCGGCgGGCGCUUGGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 57412 0.79 0.082537
Target:  5'- cGACGUCGCCgGCGAG-CUCGAGGUg -3'
miRNA:   3'- aCUGCGGCGGgCGCUUgGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 10915 0.79 0.092169
Target:  5'- aGGCGCUGCCaCuCGAggGCCUCGAGGUCa -3'
miRNA:   3'- aCUGCGGCGG-GcGCU--UGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 16653 0.79 0.087227
Target:  5'- cGACGUCGUCCGgGAGguCCUCGucGCCg -3'
miRNA:   3'- aCUGCGGCGGGCgCUU--GGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 7383 0.78 0.105712
Target:  5'- gUGAUcCCGCCUGCGAccuCCUCGAAGUa -3'
miRNA:   3'- -ACUGcGGCGGGCGCUu--GGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 6680 0.77 0.114715
Target:  5'- cGGCGCUGCUCGaCGAcguccAUCUCGAGGUCa -3'
miRNA:   3'- aCUGCGGCGGGC-GCU-----UGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 36161 0.76 0.141948
Target:  5'- gUGACGCCGCauuCCGCGAgaucuucACCgUUGAAGCg -3'
miRNA:   3'- -ACUGCGGCG---GGCGCU-------UGG-AGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 44643 0.75 0.1759
Target:  5'- gGACGCgaucuccgagccCGCCCaGCGcGACCUCGAgggcgAGCCg -3'
miRNA:   3'- aCUGCG------------GCGGG-CGC-UUGGAGCU-----UCGG- -5'
16302 5' -58.8 NC_004084.1 + 1593 0.75 0.173155
Target:  5'- cGACGUCGCCCGgcugggagcucugcuCGAugaacuCCUCGAggaGGCCg -3'
miRNA:   3'- aCUGCGGCGGGC---------------GCUu-----GGAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 19958 0.75 0.154171
Target:  5'- cGACaCgGUCuCGCGAuCCUCGAGGCCg -3'
miRNA:   3'- aCUGcGgCGG-GCGCUuGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 5151 0.75 0.162555
Target:  5'- gGACGUCGCCCGgcccGAUCUCGucGCCg -3'
miRNA:   3'- aCUGCGGCGGGCgc--UUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 10080 0.75 0.171347
Target:  5'- uUGAuCGCCG-CCGUacACCUUGAGGCCg -3'
miRNA:   3'- -ACU-GCGGCgGGCGcuUGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 52215 0.75 0.154171
Target:  5'- gGGCGUCGguCUCGCGAGCCUCGAucgagacgAGCUc -3'
miRNA:   3'- aCUGCGGC--GGGCGCUUGGAGCU--------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 30046 0.75 0.162555
Target:  5'- gGGgGCCGCUCGCGucguugugccAGCCgUCGAGGCUg -3'
miRNA:   3'- aCUgCGGCGGGCGC----------UUGG-AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 39611 0.75 0.1759
Target:  5'- gGACGUgGCCgGCGAcguCCUCGAcgAGUCg -3'
miRNA:   3'- aCUGCGgCGGgCGCUu--GGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 29479 0.74 0.190212
Target:  5'- cGACGCUGUCgaCGCGcuCCcCGAGGCCg -3'
miRNA:   3'- aCUGCGGCGG--GCGCuuGGaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 50224 0.74 0.180561
Target:  5'- cGACGCCaUCCGCGAACCccacUCuGAGGCg -3'
miRNA:   3'- aCUGCGGcGGGCGCUUGG----AG-CUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.