miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 47181 0.71 0.291649
Target:  5'- gGAUGCUGaCCGgGAcggcuUCUCGAGGCCa -3'
miRNA:   3'- aCUGCGGCgGGCgCUu----GGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 468 0.71 0.298774
Target:  5'- gGACGuuGCCCGguuCGucGCCUCGAuccuGCUg -3'
miRNA:   3'- aCUGCggCGGGC---GCu-UGGAGCUu---CGG- -5'
16302 5' -58.8 NC_004084.1 + 28007 0.71 0.306033
Target:  5'- cGuCGCCGCCCGUcGACgUCGGcuCCa -3'
miRNA:   3'- aCuGCGGCGGGCGcUUGgAGCUucGG- -5'
16302 5' -58.8 NC_004084.1 + 28379 0.71 0.306033
Target:  5'- cGACGCgagCGgccCCCGCGAGaCCUCGAucGGCg -3'
miRNA:   3'- aCUGCG---GC---GGGCGCUU-GGAGCU--UCGg -5'
16302 5' -58.8 NC_004084.1 + 3528 0.7 0.320953
Target:  5'- gUGACGauGCCCGaucGCCUCGAcguucgaagaGGCCa -3'
miRNA:   3'- -ACUGCggCGGGCgcuUGGAGCU----------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 54111 0.7 0.320953
Target:  5'- cGACGaCGCCCGCGAucACCggCGGGacGUCg -3'
miRNA:   3'- aCUGCgGCGGGCGCU--UGGa-GCUU--CGG- -5'
16302 5' -58.8 NC_004084.1 + 29182 0.7 0.328615
Target:  5'- gGGCGCgacgaguacuCGCCCGCGAACaacgUCGAcGCg -3'
miRNA:   3'- aCUGCG----------GCGGGCGCUUGg---AGCUuCGg -5'
16302 5' -58.8 NC_004084.1 + 7204 0.7 0.333277
Target:  5'- cGACGCaccacgcccaguaGCCCGCGccagcgccGACCUCGAcgaucGGCg -3'
miRNA:   3'- aCUGCGg------------CGGGCGC--------UUGGAGCU-----UCGg -5'
16302 5' -58.8 NC_004084.1 + 23078 0.7 0.336412
Target:  5'- cGACGCgacgagguggaCGUCgGCG-ACCUCGGauAGCCa -3'
miRNA:   3'- aCUGCG-----------GCGGgCGCuUGGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 41508 0.7 0.336412
Target:  5'- gGAUGCCGCUgGCGAcguuGCUcacagcgucgaUCGGAGCa -3'
miRNA:   3'- aCUGCGGCGGgCGCU----UGG-----------AGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 299 0.7 0.344342
Target:  5'- cGACGaCCGCCgaCGaGAACC-CGAAGCa -3'
miRNA:   3'- aCUGC-GGCGG--GCgCUUGGaGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 52760 0.7 0.349973
Target:  5'- cGACGguggcuuucuggauCCGCUCGCcAGCCUCGAGuGCUu -3'
miRNA:   3'- aCUGC--------------GGCGGGCGcUUGGAGCUU-CGG- -5'
16302 5' -58.8 NC_004084.1 + 7024 0.7 0.352406
Target:  5'- cGGCGUCGgCCGCc-AUCUCGuuGCCg -3'
miRNA:   3'- aCUGCGGCgGGCGcuUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 56839 0.7 0.352406
Target:  5'- -aGCGCgGgCCuCGAGCCUCG-GGCCa -3'
miRNA:   3'- acUGCGgCgGGcGCUUGGAGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 41192 0.7 0.352406
Target:  5'- gGACGaacacgaCGCCCGCGAcGCUggCGAAacGCCg -3'
miRNA:   3'- aCUGCg------GCGGGCGCU-UGGa-GCUU--CGG- -5'
16302 5' -58.8 NC_004084.1 + 56854 0.7 0.352406
Target:  5'- gGAC-CCGUUCGCGGGCuccggCUCGAcGGCCg -3'
miRNA:   3'- aCUGcGGCGGGCGCUUG-----GAGCU-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 5493 0.7 0.352406
Target:  5'- gUGACG-CGCUCgGCGuauGCCUCGAccuccugcuuGGCCu -3'
miRNA:   3'- -ACUGCgGCGGG-CGCu--UGGAGCU----------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 30125 0.7 0.352406
Target:  5'- --uCGCCGCCCcgaucGCGAGaCUcccguccacgagUCGAAGCCg -3'
miRNA:   3'- acuGCGGCGGG-----CGCUU-GG------------AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 54147 0.7 0.359778
Target:  5'- cUGACGCCGUUCGCGucgaagggcgagaAGCaaCGAGGCg -3'
miRNA:   3'- -ACUGCGGCGGGCGC-------------UUGgaGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 16803 0.7 0.360603
Target:  5'- gGAcCGUCGCCuCGCGuucguCCUCGAcguAGUCg -3'
miRNA:   3'- aCU-GCGGCGG-GCGCuu---GGAGCU---UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.