miRNA display CGI


Results 61 - 80 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 16803 0.7 0.360603
Target:  5'- gGAcCGUCGCCuCGCGuucguCCUCGAcguAGUCg -3'
miRNA:   3'- aCU-GCGGCGG-GCGCuu---GGAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 30231 0.69 0.368932
Target:  5'- aGGCGauGUCCGCGGcgACgUCGAacaGGCCg -3'
miRNA:   3'- aCUGCggCGGGCGCU--UGgAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 10769 0.69 0.377392
Target:  5'- gGGCGUCGCC----GACCUCGAcGCCg -3'
miRNA:   3'- aCUGCGGCGGgcgcUUGGAGCUuCGG- -5'
16302 5' -58.8 NC_004084.1 + 374 0.69 0.377392
Target:  5'- gUGcCGCgaGCCCGgGGACgUCGccGCCg -3'
miRNA:   3'- -ACuGCGg-CGGGCgCUUGgAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 39512 0.69 0.380812
Target:  5'- gGACGUcauCGUUCGCGAcguCCUCGAggaucuccucgugauGGCCa -3'
miRNA:   3'- aCUGCG---GCGGGCGCUu--GGAGCU---------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 17159 0.69 0.385981
Target:  5'- gGACGaUCGCCgGCGA-CgUCGAAGgCg -3'
miRNA:   3'- aCUGC-GGCGGgCGCUuGgAGCUUCgG- -5'
16302 5' -58.8 NC_004084.1 + 6661 0.69 0.385981
Target:  5'- cGACGaagaGCCCGaCGAcGCCaCGAAGCUg -3'
miRNA:   3'- aCUGCgg--CGGGC-GCU-UGGaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 9719 0.69 0.385981
Target:  5'- cGACGCCgauGCCgGCG-GCUUCGAGGaUCu -3'
miRNA:   3'- aCUGCGG---CGGgCGCuUGGAGCUUC-GG- -5'
16302 5' -58.8 NC_004084.1 + 49455 0.69 0.394699
Target:  5'- cGuCGCCGCcgucuucgucgCCGCuguCCUCGGAGUCg -3'
miRNA:   3'- aCuGCGGCG-----------GGCGcuuGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 8137 0.69 0.394699
Target:  5'- cGACGCCugGUCgGCagacgucgaGGACCUCGccGCCa -3'
miRNA:   3'- aCUGCGG--CGGgCG---------CUUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 22145 0.69 0.394699
Target:  5'- cGAUGaCUGaCCGCGAgcGCCUCGgcGCa -3'
miRNA:   3'- aCUGC-GGCgGGCGCU--UGGAGCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 22488 0.69 0.400876
Target:  5'- cGACGCCggggacauGCUCGUGAACCgcgucauccUCGAcgacgaucgccuccGGCCg -3'
miRNA:   3'- aCUGCGG--------CGGGCGCUUGG---------AGCU--------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 3838 0.69 0.401764
Target:  5'- cGACGCCGacgacggcuccaCCG-GAACCUCGguGUCc -3'
miRNA:   3'- aCUGCGGCg-----------GGCgCUUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 13912 0.69 0.402652
Target:  5'- gGGCGaCCGCuUCGCGGAacuCCUCGucaucguuuaggcGAGCCu -3'
miRNA:   3'- aCUGC-GGCG-GGCGCUU---GGAGC-------------UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 31643 0.69 0.403542
Target:  5'- cGACGuuGCgugggggaugauCCGCGAcCuCUCGAuGGCCg -3'
miRNA:   3'- aCUGCggCG------------GGCGCUuG-GAGCU-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 53080 0.69 0.403542
Target:  5'- --uCGCCGCCCGCucggcgacguGAuCUUCGAgucGGCCc -3'
miRNA:   3'- acuGCGGCGGGCG----------CUuGGAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 6495 0.69 0.403542
Target:  5'- aGACGgCGCCCGaCGGuGCCgugaCGAAGUUc -3'
miRNA:   3'- aCUGCgGCGGGC-GCU-UGGa---GCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 44137 0.69 0.403542
Target:  5'- cGAaGCCGCUCGCGA-CgaCGAGGaCCu -3'
miRNA:   3'- aCUgCGGCGGGCGCUuGgaGCUUC-GG- -5'
16302 5' -58.8 NC_004084.1 + 57636 0.69 0.41251
Target:  5'- cGAgGUCGCgCGUc-GCCUCGAcgAGCCg -3'
miRNA:   3'- aCUgCGGCGgGCGcuUGGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 20618 0.69 0.41251
Target:  5'- cGACu---CCCGCGAACCUCGuAGCa -3'
miRNA:   3'- aCUGcggcGGGCGCUUGGAGCuUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.