miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 9452 0.66 0.555609
Target:  5'- gGACGCCGUagucggcggcaUCGUGuuugucccaggucACCUCGuAGCCa -3'
miRNA:   3'- aCUGCGGCG-----------GGCGCu------------UGGAGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 50258 0.66 0.54937
Target:  5'- cGuCGCCGUUgGCGGcgagguCCUCGAcgucuGCCg -3'
miRNA:   3'- aCuGCGGCGGgCGCUu-----GGAGCUu----CGG- -5'
16302 5' -58.8 NC_004084.1 + 8072 0.66 0.54937
Target:  5'- aGAUGUCGCCCGgGuucuuGCCguUCGGguGGCa -3'
miRNA:   3'- aCUGCGGCGGGCgCu----UGG--AGCU--UCGg -5'
16302 5' -58.8 NC_004084.1 + 53662 0.66 0.54937
Target:  5'- cGGCGuUCGCCC-CG-AUCUCGAucAGCUg -3'
miRNA:   3'- aCUGC-GGCGGGcGCuUGGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 50110 0.66 0.54937
Target:  5'- cGACGCCGUCUG-GA----CGAAGCCc -3'
miRNA:   3'- aCUGCGGCGGGCgCUuggaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 51638 0.66 0.54937
Target:  5'- aGaACGUC-CCCGCcgaGACCUCGGAcuGCCc -3'
miRNA:   3'- aC-UGCGGcGGGCGc--UUGGAGCUU--CGG- -5'
16302 5' -58.8 NC_004084.1 + 1749 0.66 0.54937
Target:  5'- aGAC-CCGCCgC-CGAaguACCgagCGggGCCu -3'
miRNA:   3'- aCUGcGGCGG-GcGCU---UGGa--GCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 41064 0.66 0.54937
Target:  5'- aGAaGCgGUCCGCGAguACgUCGAcgagacgaugcgGGCCg -3'
miRNA:   3'- aCUgCGgCGGGCGCU--UGgAGCU------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 28846 0.66 0.54937
Target:  5'- cGACGCCcaCCCgGCGAuggcCCUCaacGGCCu -3'
miRNA:   3'- aCUGCGGc-GGG-CGCUu---GGAGcu-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 12981 0.66 0.543154
Target:  5'- cGGCGUCagacauccccaucaCCCGUGAACgagUCGAGGCCc -3'
miRNA:   3'- aCUGCGGc-------------GGGCGCUUGg--AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 7325 0.66 0.539023
Target:  5'- --uCGCUGCUCGaGGACUUCGAucGCCc -3'
miRNA:   3'- acuGCGGCGGGCgCUUGGAGCUu-CGG- -5'
16302 5' -58.8 NC_004084.1 + 17571 0.66 0.539023
Target:  5'- cGACgGCCaGUUCGgGGACCUCGAccuCCg -3'
miRNA:   3'- aCUG-CGG-CGGGCgCUUGGAGCUuc-GG- -5'
16302 5' -58.8 NC_004084.1 + 43782 0.66 0.539023
Target:  5'- gGGCGCuCGCCgGCGGAgaguCCggcggCGAGgagcGCCg -3'
miRNA:   3'- aCUGCG-GCGGgCGCUU----GGa----GCUU----CGG- -5'
16302 5' -58.8 NC_004084.1 + 15153 0.66 0.539023
Target:  5'- cUGACaGCC-CUCGCuGACUUUGAAGCa -3'
miRNA:   3'- -ACUG-CGGcGGGCGcUUGGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 44242 0.66 0.535931
Target:  5'- cGGCucacUCGCuuGuCGAGCCUCGAuaccguguucauccAGCCa -3'
miRNA:   3'- aCUGc---GGCGggC-GCUUGGAGCU--------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 4452 0.67 0.532846
Target:  5'- cGACG-CGCCCGaCuggacgaucgaguucGAGCUggCGAAGCCc -3'
miRNA:   3'- aCUGCgGCGGGC-G---------------CUUGGa-GCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 47567 0.67 0.528742
Target:  5'- aGACGCCGUUCGaGGACgUUCGcGAGCg -3'
miRNA:   3'- aCUGCGGCGGGCgCUUG-GAGC-UUCGg -5'
16302 5' -58.8 NC_004084.1 + 27654 0.67 0.528742
Target:  5'- gGAUGCCGCCgGgGAuccgguuCCUCGucaucuuGCUg -3'
miRNA:   3'- aCUGCGGCGGgCgCUu------GGAGCuu-----CGG- -5'
16302 5' -58.8 NC_004084.1 + 29226 0.67 0.528742
Target:  5'- cGACGuuGUUCGCGGGCgaguaCUCGucGCg -3'
miRNA:   3'- aCUGCggCGGGCGCUUG-----GAGCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 8530 0.67 0.528742
Target:  5'- -cGCGCUGUaCCGCGA-CCUCGAGaUCg -3'
miRNA:   3'- acUGCGGCG-GGCGCUuGGAGCUUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.