miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 29226 0.67 0.528742
Target:  5'- cGACGuuGUUCGCGGGCgaguaCUCGucGCg -3'
miRNA:   3'- aCUGCggCGGGCGCUUG-----GAGCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 50957 0.67 0.518534
Target:  5'- cGuCGCCGCUCGagucgccguCGGACUcCGAGGUCu -3'
miRNA:   3'- aCuGCGGCGGGC---------GCUUGGaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 7889 0.67 0.518534
Target:  5'- cGAaGCUGCUCGCGA---UCGggGCUc -3'
miRNA:   3'- aCUgCGGCGGGCGCUuggAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 24312 0.67 0.518534
Target:  5'- gGGCGUuaauuCGCCCGCacguGCCUucaCGAGGCg -3'
miRNA:   3'- aCUGCG-----GCGGGCGcu--UGGA---GCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 6381 0.67 0.518534
Target:  5'- cGACGCCGUagaCCGCucGCucagccugCUCGAGGgCCu -3'
miRNA:   3'- aCUGCGGCG---GGCGcuUG--------GAGCUUC-GG- -5'
16302 5' -58.8 NC_004084.1 + 11932 0.67 0.518534
Target:  5'- cGACGUCGCgaCCaGCGAGgaCUCGAucgAGCUg -3'
miRNA:   3'- aCUGCGGCG--GG-CGCUUg-GAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 29399 0.67 0.518534
Target:  5'- gUGAUGCCGCCCuCGAuggGCUccugcaUCGcGGUCa -3'
miRNA:   3'- -ACUGCGGCGGGcGCU---UGG------AGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 49365 0.67 0.508406
Target:  5'- cGACGUCGCCCGacucuACCcgcUCGAuGCg -3'
miRNA:   3'- aCUGCGGCGGGCgcu--UGG---AGCUuCGg -5'
16302 5' -58.8 NC_004084.1 + 10837 0.67 0.508406
Target:  5'- aGuCGCCaccgcGCUCGCGAAcguCCUCGAacGGCg -3'
miRNA:   3'- aCuGCGG-----CGGGCGCUU---GGAGCU--UCGg -5'
16302 5' -58.8 NC_004084.1 + 37375 0.67 0.507398
Target:  5'- gGugGCCGCCUGacuucgaCGAA-CUCGGcagacgcuGGCCg -3'
miRNA:   3'- aCugCGGCGGGC-------GCUUgGAGCU--------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 54813 0.67 0.498362
Target:  5'- aUGACGCC-CCCGCGAuauUCgCGGaaacGGUCg -3'
miRNA:   3'- -ACUGCGGcGGGCGCUu--GGaGCU----UCGG- -5'
16302 5' -58.8 NC_004084.1 + 47945 0.67 0.488408
Target:  5'- cGAgGCCGUCCGUcaggccguccugGAucGCCUCGcGGGCUu -3'
miRNA:   3'- aCUgCGGCGGGCG------------CU--UGGAGC-UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 9720 0.67 0.488408
Target:  5'- gGACGUCGCCgGa----UUCGAGGCCc -3'
miRNA:   3'- aCUGCGGCGGgCgcuugGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 41478 0.67 0.488408
Target:  5'- cGACGUcgcgaCGCCCGcCGAugC-CGAaccgcacccGGCCa -3'
miRNA:   3'- aCUGCG-----GCGGGC-GCUugGaGCU---------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 2104 0.67 0.487417
Target:  5'- aGGCGCUgggacauGCCCuCGAugcaguCCUCGAAGUa -3'
miRNA:   3'- aCUGCGG-------CGGGcGCUu-----GGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 41262 0.67 0.478548
Target:  5'- cGACGUCGCCgGCGAucguCCccaucagUGAAccGCCg -3'
miRNA:   3'- aCUGCGGCGGgCGCUu---GGa------GCUU--CGG- -5'
16302 5' -58.8 NC_004084.1 + 43982 0.67 0.478548
Target:  5'- cGACGCuCuaCCGCGAACUgccCG-AGCUg -3'
miRNA:   3'- aCUGCG-GcgGGCGCUUGGa--GCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 21438 0.67 0.478548
Target:  5'- gUGAgGauGUCCGCGAgcGCCUCGAAcggacGCUg -3'
miRNA:   3'- -ACUgCggCGGGCGCU--UGGAGCUU-----CGG- -5'
16302 5' -58.8 NC_004084.1 + 31075 0.67 0.478548
Target:  5'- aGACGUCGUccggcccaCCGCGucCCUCGAacgugaacGGUCg -3'
miRNA:   3'- aCUGCGGCG--------GGCGCuuGGAGCU--------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 11844 0.67 0.478548
Target:  5'- cGACGaUCG-CCGCGAugC-CGAuGCCg -3'
miRNA:   3'- aCUGC-GGCgGGCGCUugGaGCUuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.