miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 299 0.7 0.344342
Target:  5'- cGACGaCCGCCgaCGaGAACC-CGAAGCa -3'
miRNA:   3'- aCUGC-GGCGG--GCgCUUGGaGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 374 0.69 0.377392
Target:  5'- gUGcCGCgaGCCCGgGGACgUCGccGCCg -3'
miRNA:   3'- -ACuGCGg-CGGGCgCUUGgAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 468 0.71 0.298774
Target:  5'- gGACGuuGCCCGguuCGucGCCUCGAuccuGCUg -3'
miRNA:   3'- aCUGCggCGGGC---GCu-UGGAGCUu---CGG- -5'
16302 5' -58.8 NC_004084.1 + 1500 0.84 0.03763
Target:  5'- aGACGUCGCCCuCGAG-CUCGAAGCCg -3'
miRNA:   3'- aCUGCGGCGGGcGCUUgGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 1593 0.75 0.173155
Target:  5'- cGACGUCGCCCGgcugggagcucugcuCGAugaacuCCUCGAggaGGCCg -3'
miRNA:   3'- aCUGCGGCGGGC---------------GCUu-----GGAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 1749 0.66 0.54937
Target:  5'- aGAC-CCGCCgC-CGAaguACCgagCGggGCCu -3'
miRNA:   3'- aCUGcGGCGG-GcGCU---UGGa--GCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 2104 0.67 0.487417
Target:  5'- aGGCGCUgggacauGCCCuCGAugcaguCCUCGAAGUa -3'
miRNA:   3'- aCUGCGG-------CGGGcGCUu-----GGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 2218 0.66 0.574441
Target:  5'- aUGuccuCGCCGCUCGCuucggccagcgcggaGAucuCCUCGGucuuGCCg -3'
miRNA:   3'- -ACu---GCGGCGGGCG---------------CUu--GGAGCUu---CGG- -5'
16302 5' -58.8 NC_004084.1 + 2350 0.72 0.245478
Target:  5'- aGuCGUCGuUCCGCGucguCCUCGAAGUCg -3'
miRNA:   3'- aCuGCGGC-GGGCGCuu--GGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 2545 0.68 0.449577
Target:  5'- gGugGCCG-CUGCGGACCUcuuccgCGAAGaCg -3'
miRNA:   3'- aCugCGGCgGGCGCUUGGA------GCUUCgG- -5'
16302 5' -58.8 NC_004084.1 + 3528 0.7 0.320953
Target:  5'- gUGACGauGCCCGaucGCCUCGAcguucgaagaGGCCa -3'
miRNA:   3'- -ACUGCggCGGGCgcuUGGAGCU----------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 3838 0.69 0.401764
Target:  5'- cGACGCCGacgacggcuccaCCG-GAACCUCGguGUCc -3'
miRNA:   3'- aCUGCGGCg-----------GGCgCUUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 4452 0.67 0.532846
Target:  5'- cGACG-CGCCCGaCuggacgaucgaguucGAGCUggCGAAGCCc -3'
miRNA:   3'- aCUGCgGCGGGC-G---------------CUUGGa-GCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 5151 0.75 0.162555
Target:  5'- gGACGUCGCCCGgcccGAUCUCGucGCCg -3'
miRNA:   3'- aCUGCGGCGGGCgc--UUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 5493 0.7 0.352406
Target:  5'- gUGACG-CGCUCgGCGuauGCCUCGAccuccugcuuGGCCu -3'
miRNA:   3'- -ACUGCgGCGGG-CGCu--UGGAGCU----------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 6381 0.67 0.518534
Target:  5'- cGACGCCGUagaCCGCucGCucagccugCUCGAGGgCCu -3'
miRNA:   3'- aCUGCGGCG---GGCGcuUG--------GAGCUUC-GG- -5'
16302 5' -58.8 NC_004084.1 + 6495 0.69 0.403542
Target:  5'- aGACGgCGCCCGaCGGuGCCgugaCGAAGUUc -3'
miRNA:   3'- aCUGCgGCGGGC-GCU-UGGa---GCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 6661 0.69 0.385981
Target:  5'- cGACGaagaGCCCGaCGAcGCCaCGAAGCUg -3'
miRNA:   3'- aCUGCgg--CGGGC-GCU-UGGaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 6680 0.77 0.114715
Target:  5'- cGGCGCUGCUCGaCGAcguccAUCUCGAGGUCa -3'
miRNA:   3'- aCUGCGGCGGGC-GCU-----UGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 7024 0.7 0.352406
Target:  5'- cGGCGUCGgCCGCc-AUCUCGuuGCCg -3'
miRNA:   3'- aCUGCGGCgGGCGcuUGGAGCuuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.