miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 7204 0.7 0.333277
Target:  5'- cGACGCaccacgcccaguaGCCCGCGccagcgccGACCUCGAcgaucGGCg -3'
miRNA:   3'- aCUGCGg------------CGGGCGC--------UUGGAGCU-----UCGg -5'
16302 5' -58.8 NC_004084.1 + 7325 0.66 0.539023
Target:  5'- --uCGCUGCUCGaGGACUUCGAucGCCc -3'
miRNA:   3'- acuGCGGCGGGCgCUUGGAGCUu-CGG- -5'
16302 5' -58.8 NC_004084.1 + 7383 0.78 0.105712
Target:  5'- gUGAUcCCGCCUGCGAccuCCUCGAAGUa -3'
miRNA:   3'- -ACUGcGGCGGGCGCUu--GGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 7432 0.72 0.271074
Target:  5'- cGAUGCCGacggUgGCGAGaCCUCGGAGUCc -3'
miRNA:   3'- aCUGCGGCg---GgCGCUU-GGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 7889 0.67 0.518534
Target:  5'- cGAaGCUGCUCGCGA---UCGggGCUc -3'
miRNA:   3'- aCUgCGGCGGGCGCUuggAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 8072 0.66 0.54937
Target:  5'- aGAUGUCGCCCGgGuucuuGCCguUCGGguGGCa -3'
miRNA:   3'- aCUGCGGCGGGCgCu----UGG--AGCU--UCGg -5'
16302 5' -58.8 NC_004084.1 + 8137 0.69 0.394699
Target:  5'- cGACGCCugGUCgGCagacgucgaGGACCUCGccGCCa -3'
miRNA:   3'- aCUGCGG--CGGgCG---------CUUGGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 8184 0.66 0.580752
Target:  5'- cGACGCCucagagugggGUUCGCGGaugGCgUCGAGGUUg -3'
miRNA:   3'- aCUGCGG----------CGGGCGCU---UGgAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 8530 0.67 0.528742
Target:  5'- -cGCGCUGUaCCGCGA-CCUCGAGaUCg -3'
miRNA:   3'- acUGCGGCG-GGCGCUuGGAGCUUcGG- -5'
16302 5' -58.8 NC_004084.1 + 9452 0.66 0.555609
Target:  5'- gGACGCCGUagucggcggcaUCGUGuuugucccaggucACCUCGuAGCCa -3'
miRNA:   3'- aCUGCGGCG-----------GGCGCu------------UGGAGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 9719 0.69 0.385981
Target:  5'- cGACGCCgauGCCgGCG-GCUUCGAGGaUCu -3'
miRNA:   3'- aCUGCGG---CGGgCGCuUGGAGCUUC-GG- -5'
16302 5' -58.8 NC_004084.1 + 9720 0.67 0.488408
Target:  5'- gGACGUCGCCgGa----UUCGAGGCCc -3'
miRNA:   3'- aCUGCGGCGGgCgcuugGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 9907 0.66 0.569194
Target:  5'- aGGCGUaCGUCCaaGAcaagagcGCCUCGAcgAGCCu -3'
miRNA:   3'- aCUGCG-GCGGGcgCU-------UGGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 10080 0.75 0.171347
Target:  5'- uUGAuCGCCG-CCGUacACCUUGAGGCCg -3'
miRNA:   3'- -ACU-GCGGCgGGCGcuUGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 10535 0.66 0.570242
Target:  5'- cGACGuuGCCgagccaGCGGACgaguagCUCGggGUg -3'
miRNA:   3'- aCUGCggCGGg-----CGCUUG------GAGCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 10769 0.69 0.377392
Target:  5'- gGGCGUCGCC----GACCUCGAcGCCg -3'
miRNA:   3'- aCUGCGGCGGgcgcUUGGAGCUuCGG- -5'
16302 5' -58.8 NC_004084.1 + 10837 0.67 0.508406
Target:  5'- aGuCGCCaccgcGCUCGCGAAcguCCUCGAacGGCg -3'
miRNA:   3'- aCuGCGG-----CGGGCGCUU---GGAGCU--UCGg -5'
16302 5' -58.8 NC_004084.1 + 10915 0.79 0.092169
Target:  5'- aGGCGCUGCCaCuCGAggGCCUCGAGGUCa -3'
miRNA:   3'- aCUGCGGCGG-GcGCU--UGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 11105 0.68 0.440137
Target:  5'- aGAuCGCCGUUCGCGG--CUCGAaggaugucccagAGCCg -3'
miRNA:   3'- aCU-GCGGCGGGCGCUugGAGCU------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 11727 0.71 0.2778
Target:  5'- aGACGUCGCCgGCGacGugCUCGAAucGCg -3'
miRNA:   3'- aCUGCGGCGGgCGC--UugGAGCUU--CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.