miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 11844 0.67 0.478548
Target:  5'- cGACGaUCG-CCGCGAugC-CGAuGCCg -3'
miRNA:   3'- aCUGC-GGCgGGCGCUugGaGCUuCGG- -5'
16302 5' -58.8 NC_004084.1 + 11932 0.67 0.518534
Target:  5'- cGACGUCGCgaCCaGCGAGgaCUCGAucgAGCUg -3'
miRNA:   3'- aCUGCGGCG--GG-CGCUUg-GAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 12420 0.68 0.421601
Target:  5'- gGAUGCCaaCCGCG--UCUCGAAcGCCg -3'
miRNA:   3'- aCUGCGGcgGGCGCuuGGAGCUU-CGG- -5'
16302 5' -58.8 NC_004084.1 + 12981 0.66 0.543154
Target:  5'- cGGCGUCagacauccccaucaCCCGUGAACgagUCGAGGCCc -3'
miRNA:   3'- aCUGCGGc-------------GGGCGCUUGg--AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 13447 0.66 0.580752
Target:  5'- gGugGCgUGaCCUGCGAACCgCGGA-CCa -3'
miRNA:   3'- aCugCG-GC-GGGCGCUUGGaGCUUcGG- -5'
16302 5' -58.8 NC_004084.1 + 13912 0.69 0.402652
Target:  5'- gGGCGaCCGCuUCGCGGAacuCCUCGucaucguuuaggcGAGCCu -3'
miRNA:   3'- aCUGC-GGCG-GGCGCUU---GGAGC-------------UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 14654 0.73 0.227622
Target:  5'- -aGCGCCcagucgauGCCCGCGAGCgUCccGGCCg -3'
miRNA:   3'- acUGCGG--------CGGGCGCUUGgAGcuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 15014 0.67 0.478548
Target:  5'- -uGCGCUgcgGCUCGuCGAGCgUCGAcGGCCa -3'
miRNA:   3'- acUGCGG---CGGGC-GCUUGgAGCU-UCGG- -5'
16302 5' -58.8 NC_004084.1 + 15153 0.66 0.539023
Target:  5'- cUGACaGCC-CUCGCuGACUUUGAAGCa -3'
miRNA:   3'- -ACUG-CGGcGGGCGcUUGGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 16653 0.79 0.087227
Target:  5'- cGACGUCGUCCGgGAGguCCUCGucGCCg -3'
miRNA:   3'- aCUGCGGCGGGCgCUU--GGAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 16803 0.7 0.360603
Target:  5'- gGAcCGUCGCCuCGCGuucguCCUCGAcguAGUCg -3'
miRNA:   3'- aCU-GCGGCGG-GCGCuu---GGAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 16949 0.66 0.580752
Target:  5'- gGGCGUCGCgaCGuCGGGuCUUCGAGcGCCu -3'
miRNA:   3'- aCUGCGGCGg-GC-GCUU-GGAGCUU-CGG- -5'
16302 5' -58.8 NC_004084.1 + 17063 0.72 0.251683
Target:  5'- cUGACGUCGCaaGCGGugUUCGAGaCCg -3'
miRNA:   3'- -ACUGCGGCGggCGCUugGAGCUUcGG- -5'
16302 5' -58.8 NC_004084.1 + 17159 0.69 0.385981
Target:  5'- gGACGaUCGCCgGCGA-CgUCGAAGgCg -3'
miRNA:   3'- aCUGC-GGCGGgCGCUuGgAGCUUCgG- -5'
16302 5' -58.8 NC_004084.1 + 17571 0.66 0.539023
Target:  5'- cGACgGCCaGUUCGgGGACCUCGAccuCCg -3'
miRNA:   3'- aCUG-CGG-CGGGCgCUUGGAGCUuc-GG- -5'
16302 5' -58.8 NC_004084.1 + 17680 0.68 0.459129
Target:  5'- gGGCGaCGCUgGuCGAGCUUCGAgacgcuacugAGCCg -3'
miRNA:   3'- aCUGCgGCGGgC-GCUUGGAGCU----------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 18573 0.73 0.216338
Target:  5'- cGGCGCCGCggCCGcCGAuggaCUCGAGcGCCa -3'
miRNA:   3'- aCUGCGGCG--GGC-GCUug--GAGCUU-CGG- -5'
16302 5' -58.8 NC_004084.1 + 18823 0.73 0.205537
Target:  5'- cGACGCCagacaagcgcGCCCG-GGACCUCGucgacGAGCUg -3'
miRNA:   3'- aCUGCGG----------CGGGCgCUUGGAGC-----UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 19021 0.68 0.43081
Target:  5'- cGACGCCgaGCUCGaacuGGACUUCGAAaCCa -3'
miRNA:   3'- aCUGCGG--CGGGCg---CUUGGAGCUUcGG- -5'
16302 5' -58.8 NC_004084.1 + 19958 0.75 0.154171
Target:  5'- cGACaCgGUCuCGCGAuCCUCGAGGCCg -3'
miRNA:   3'- aCUGcGgCGG-GCGCUuGGAGCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.