miRNA display CGI


Results 61 - 80 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 20618 0.69 0.41251
Target:  5'- cGACu---CCCGCGAACCUCGuAGCa -3'
miRNA:   3'- aCUGcggcGGGCGCUUGGAGCuUCGg -5'
16302 5' -58.8 NC_004084.1 + 21438 0.67 0.478548
Target:  5'- gUGAgGauGUCCGCGAgcGCCUCGAAcggacGCUg -3'
miRNA:   3'- -ACUgCggCGGGCGCU--UGGAGCUU-----CGG- -5'
16302 5' -58.8 NC_004084.1 + 22145 0.69 0.394699
Target:  5'- cGAUGaCUGaCCGCGAgcGCCUCGgcGCa -3'
miRNA:   3'- aCUGC-GGCgGGCGCU--UGGAGCuuCGg -5'
16302 5' -58.8 NC_004084.1 + 22488 0.69 0.400876
Target:  5'- cGACGCCggggacauGCUCGUGAACCgcgucauccUCGAcgacgaucgccuccGGCCg -3'
miRNA:   3'- aCUGCGG--------CGGGCGCUUGG---------AGCU--------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 22837 0.66 0.580752
Target:  5'- cGA-GCCGCCgagGCGAACgUCGuuguaGAGCUg -3'
miRNA:   3'- aCUgCGGCGGg--CGCUUGgAGC-----UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 22857 0.72 0.26448
Target:  5'- gUGAUGCuCGacgaacCCCGUGAGaucacaCUCGAGGCCa -3'
miRNA:   3'- -ACUGCG-GC------GGGCGCUUg-----GAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 23078 0.7 0.336412
Target:  5'- cGACGCgacgagguggaCGUCgGCG-ACCUCGGauAGCCa -3'
miRNA:   3'- aCUGCG-----------GCGGgCGCuUGGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 23275 0.68 0.468787
Target:  5'- gGAUGUacCCCGaGGACCUCGAcGCCc -3'
miRNA:   3'- aCUGCGgcGGGCgCUUGGAGCUuCGG- -5'
16302 5' -58.8 NC_004084.1 + 23590 0.69 0.41251
Target:  5'- cGACGUCGUgcuccgCCGgGAACugcgCUCGAAGCg -3'
miRNA:   3'- aCUGCGGCG------GGCgCUUG----GAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 24177 0.68 0.421601
Target:  5'- cGACGCU-CCCGCacACCUaCGAcgacAGCCg -3'
miRNA:   3'- aCUGCGGcGGGCGcuUGGA-GCU----UCGG- -5'
16302 5' -58.8 NC_004084.1 + 24312 0.67 0.518534
Target:  5'- gGGCGUuaauuCGCCCGCacguGCCUucaCGAGGCg -3'
miRNA:   3'- aCUGCG-----GCGGGCGcu--UGGA---GCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 27196 0.73 0.233449
Target:  5'- cGACGCUGaaUGCGuACCUCGAGGUUc -3'
miRNA:   3'- aCUGCGGCggGCGCuUGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 27654 0.67 0.528742
Target:  5'- gGAUGCCGCCgGgGAuccgguuCCUCGucaucuuGCUg -3'
miRNA:   3'- aCUGCGGCGGgCgCUu------GGAGCuu-----CGG- -5'
16302 5' -58.8 NC_004084.1 + 28007 0.71 0.306033
Target:  5'- cGuCGCCGCCCGUcGACgUCGGcuCCa -3'
miRNA:   3'- aCuGCGGCGGGCGcUUGgAGCUucGG- -5'
16302 5' -58.8 NC_004084.1 + 28074 0.68 0.421601
Target:  5'- cGACGCCGUCgGCc-ACCUCGccgacGGUCa -3'
miRNA:   3'- aCUGCGGCGGgCGcuUGGAGCu----UCGG- -5'
16302 5' -58.8 NC_004084.1 + 28188 0.66 0.55978
Target:  5'- cGACGUCG-CCGCGGacaucGCCUCc-GGUCa -3'
miRNA:   3'- aCUGCGGCgGGCGCU-----UGGAGcuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 28379 0.71 0.306033
Target:  5'- cGACGCgagCGgccCCCGCGAGaCCUCGAucGGCg -3'
miRNA:   3'- aCUGCG---GC---GGGCGCUU-GGAGCU--UCGg -5'
16302 5' -58.8 NC_004084.1 + 28419 0.68 0.440137
Target:  5'- cUGACGUCGUCaccaGCGA-CCaggUCGAcGCCg -3'
miRNA:   3'- -ACUGCGGCGGg---CGCUuGG---AGCUuCGG- -5'
16302 5' -58.8 NC_004084.1 + 28696 0.7 0.360603
Target:  5'- ---gGUCGCCCGgaCGAucuCCUCGAacGGCCg -3'
miRNA:   3'- acugCGGCGGGC--GCUu--GGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 28739 0.72 0.258017
Target:  5'- -cGCGaCCGCgUCGCGAACCccCGGAGCUa -3'
miRNA:   3'- acUGC-GGCG-GGCGCUUGGa-GCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.