Results 81 - 100 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16302 | 5' | -58.8 | NC_004084.1 | + | 28846 | 0.66 | 0.54937 |
Target: 5'- cGACGCCcaCCCgGCGAuggcCCUCaacGGCCu -3' miRNA: 3'- aCUGCGGc-GGG-CGCUu---GGAGcu-UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 28992 | 0.67 | 0.478548 |
Target: 5'- cGACGUCGgccugaugaCCGCGAugCa-GGAGCCc -3' miRNA: 3'- aCUGCGGCg--------GGCGCUugGagCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 29067 | 0.71 | 0.284658 |
Target: 5'- -cGCGaCCGCCCGCucggGGGCgUCGucGCCg -3' miRNA: 3'- acUGC-GGCGGGCG----CUUGgAGCuuCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 29148 | 0.66 | 0.55978 |
Target: 5'- cUGGCGCUGCCgGgCGuacAACCUgGuucGAGCCn -3' miRNA: 3'- -ACUGCGGCGGgC-GC---UUGGAgC---UUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 29182 | 0.7 | 0.328615 |
Target: 5'- gGGCGCgacgaguacuCGCCCGCGAACaacgUCGAcGCg -3' miRNA: 3'- aCUGCG----------GCGGGCGCUUGg---AGCUuCGg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 29226 | 0.67 | 0.528742 |
Target: 5'- cGACGuuGUUCGCGGGCgaguaCUCGucGCg -3' miRNA: 3'- aCUGCggCGGGCGCUUG-----GAGCuuCGg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 29350 | 0.68 | 0.468787 |
Target: 5'- cGACGCC-CCCgaGCGGGCggUCGcGGCCu -3' miRNA: 3'- aCUGCGGcGGG--CGCUUGg-AGCuUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 29399 | 0.67 | 0.518534 |
Target: 5'- gUGAUGCCGCCCuCGAuggGCUccugcaUCGcGGUCa -3' miRNA: 3'- -ACUGCGGCGGGcGCU---UGG------AGCuUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 29479 | 0.74 | 0.190212 |
Target: 5'- cGACGCUGUCgaCGCGcuCCcCGAGGCCg -3' miRNA: 3'- aCUGCGGCGG--GCGCuuGGaGCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 30046 | 0.75 | 0.162555 |
Target: 5'- gGGgGCCGCUCGCGucguugugccAGCCgUCGAGGCUg -3' miRNA: 3'- aCUgCGGCGGGCGC----------UUGG-AGCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 30125 | 0.7 | 0.352406 |
Target: 5'- --uCGCCGCCCcgaucGCGAGaCUcccguccacgagUCGAAGCCg -3' miRNA: 3'- acuGCGGCGGG-----CGCUU-GG------------AGCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 30231 | 0.69 | 0.368932 |
Target: 5'- aGGCGauGUCCGCGGcgACgUCGAacaGGCCg -3' miRNA: 3'- aCUGCggCGGGCGCU--UGgAGCU---UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 30337 | 0.66 | 0.570242 |
Target: 5'- uUGACaugaGCaa-CCGCG-ACCUCGAggaGGCCg -3' miRNA: 3'- -ACUG----CGgcgGGCGCuUGGAGCU---UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 30575 | 0.68 | 0.468787 |
Target: 5'- cGGCGaCgGUCgGCGAACCggagCGggGUg -3' miRNA: 3'- aCUGC-GgCGGgCGCUUGGa---GCuuCGg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 30847 | 0.72 | 0.251683 |
Target: 5'- cGACGCUGCCUccugGCGAccguCCggGAGGCCc -3' miRNA: 3'- aCUGCGGCGGG----CGCUu---GGagCUUCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 31075 | 0.67 | 0.478548 |
Target: 5'- aGACGUCGUccggcccaCCGCGucCCUCGAacgugaacGGUCg -3' miRNA: 3'- aCUGCGGCG--------GGCGCuuGGAGCU--------UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 31207 | 0.81 | 0.05745 |
Target: 5'- cGACGUCG-UCGCGAACCUCGAGGUa -3' miRNA: 3'- aCUGCGGCgGGCGCUUGGAGCUUCGg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 31283 | 0.66 | 0.55978 |
Target: 5'- cGugGCCGgUCGCGggUCccuaUCGuugggguAGCCc -3' miRNA: 3'- aCugCGGCgGGCGCuuGG----AGCu------UCGG- -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 31508 | 0.68 | 0.456252 |
Target: 5'- aGuCGCCGCCuccacuauCGCGAuggaugccgcgaucGCCUCGGAGg- -3' miRNA: 3'- aCuGCGGCGG--------GCGCU--------------UGGAGCUUCgg -5' |
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16302 | 5' | -58.8 | NC_004084.1 | + | 31621 | 0.68 | 0.459129 |
Target: 5'- gGACGCCGUCuUGCGAuuuuuCCUCGuggaAGGUa -3' miRNA: 3'- aCUGCGGCGG-GCGCUu----GGAGC----UUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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