miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 50957 0.67 0.518534
Target:  5'- cGuCGCCGCUCGagucgccguCGGACUcCGAGGUCu -3'
miRNA:   3'- aCuGCGGCGGGC---------GCUUGGaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 50258 0.66 0.54937
Target:  5'- cGuCGCCGUUgGCGGcgagguCCUCGAcgucuGCCg -3'
miRNA:   3'- aCuGCGGCGGgCGCUu-----GGAGCUu----CGG- -5'
16302 5' -58.8 NC_004084.1 + 50224 0.74 0.180561
Target:  5'- cGACGCCaUCCGCGAACCccacUCuGAGGCg -3'
miRNA:   3'- aCUGCGGcGGGCGCUUGG----AG-CUUCGg -5'
16302 5' -58.8 NC_004084.1 + 50192 0.73 0.221919
Target:  5'- cGACGUCGCCCucuGC-AACCgugaUGAAGCCg -3'
miRNA:   3'- aCUGCGGCGGG---CGcUUGGa---GCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 50110 0.66 0.54937
Target:  5'- cGACGCCGUCUG-GA----CGAAGCCc -3'
miRNA:   3'- aCUGCGGCGGGCgCUuggaGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 49455 0.69 0.394699
Target:  5'- cGuCGCCGCcgucuucgucgCCGCuguCCUCGGAGUCg -3'
miRNA:   3'- aCuGCGGCG-----------GGCGcuuGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 49365 0.67 0.508406
Target:  5'- cGACGUCGCCCGacucuACCcgcUCGAuGCg -3'
miRNA:   3'- aCUGCGGCGGGCgcu--UGG---AGCUuCGg -5'
16302 5' -58.8 NC_004084.1 + 48676 0.68 0.421601
Target:  5'- cGAagGUCGCgaCGUGGGagauCCUCGAAGCCg -3'
miRNA:   3'- aCUg-CGGCGg-GCGCUU----GGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 48575 0.68 0.440137
Target:  5'- gUGA-GCCGCCCucGCcGACCUCGuaguGCUg -3'
miRNA:   3'- -ACUgCGGCGGG--CGcUUGGAGCuu--CGG- -5'
16302 5' -58.8 NC_004084.1 + 48171 0.73 0.221919
Target:  5'- gGACGCCGaCCGCGAcucaccaggcgACCUC-AAGCg -3'
miRNA:   3'- aCUGCGGCgGGCGCU-----------UGGAGcUUCGg -5'
16302 5' -58.8 NC_004084.1 + 47945 0.67 0.488408
Target:  5'- cGAgGCCGUCCGUcaggccguccugGAucGCCUCGcGGGCUu -3'
miRNA:   3'- aCUgCGGCGGGCG------------CU--UGGAGC-UUCGG- -5'
16302 5' -58.8 NC_004084.1 + 47905 0.66 0.580752
Target:  5'- cGACgGUCGCuCCGCGAgguGCCgcgCGAuccagGGCa -3'
miRNA:   3'- aCUG-CGGCG-GGCGCU---UGGa--GCU-----UCGg -5'
16302 5' -58.8 NC_004084.1 + 47747 0.68 0.459129
Target:  5'- cGGuCGCUGCCCgGCGAucgcaaacgGCaCUCGgcGCUg -3'
miRNA:   3'- aCU-GCGGCGGG-CGCU---------UG-GAGCuuCGG- -5'
16302 5' -58.8 NC_004084.1 + 47567 0.67 0.528742
Target:  5'- aGACGCCGUUCGaGGACgUUCGcGAGCg -3'
miRNA:   3'- aCUGCGGCGGGCgCUUG-GAGC-UUCGg -5'
16302 5' -58.8 NC_004084.1 + 47181 0.71 0.291649
Target:  5'- gGAUGCUGaCCGgGAcggcuUCUCGAGGCCa -3'
miRNA:   3'- aCUGCGGCgGGCgCUu----GGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 45534 0.73 0.232273
Target:  5'- gGACGCCGggauggguuggCGCGAggACCUCGAAGCg -3'
miRNA:   3'- aCUGCGGCgg---------GCGCU--UGGAGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 45452 0.95 0.005846
Target:  5'- cUGACGCCGCCCGCGAGa-UCGAAGCCg -3'
miRNA:   3'- -ACUGCGGCGGGCGCUUggAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 44643 0.75 0.1759
Target:  5'- gGACGCgaucuccgagccCGCCCaGCGcGACCUCGAgggcgAGCCg -3'
miRNA:   3'- aCUGCG------------GCGGG-CGC-UUGGAGCU-----UCGG- -5'
16302 5' -58.8 NC_004084.1 + 44242 0.66 0.535931
Target:  5'- cGGCucacUCGCuuGuCGAGCCUCGAuaccguguucauccAGCCa -3'
miRNA:   3'- aCUGc---GGCGggC-GCUUGGAGCU--------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 44137 0.69 0.403542
Target:  5'- cGAaGCCGCUCGCGA-CgaCGAGGaCCu -3'
miRNA:   3'- aCUgCGGCGGGCGCUuGgaGCUUC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.