miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16302 5' -58.8 NC_004084.1 + 43982 0.67 0.478548
Target:  5'- cGACGCuCuaCCGCGAACUgccCG-AGCUg -3'
miRNA:   3'- aCUGCG-GcgGGCGCUUGGa--GCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 43782 0.66 0.539023
Target:  5'- gGGCGCuCGCCgGCGGAgaguCCggcggCGAGgagcGCCg -3'
miRNA:   3'- aCUGCG-GCGGgCGCUU----GGa----GCUU----CGG- -5'
16302 5' -58.8 NC_004084.1 + 43377 0.68 0.459129
Target:  5'- cGugGUCGUacuaCGaauCGAACCUCGAGGUUc -3'
miRNA:   3'- aCugCGGCGg---GC---GCUUGGAGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 41647 0.69 0.41251
Target:  5'- cGACGUcgaguucaaaCGCCgGgCGAACaacgucaUCGAGGCCg -3'
miRNA:   3'- aCUGCG----------GCGGgC-GCUUGg------AGCUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 41508 0.7 0.336412
Target:  5'- gGAUGCCGCUgGCGAcguuGCUcacagcgucgaUCGGAGCa -3'
miRNA:   3'- aCUGCGGCGGgCGCU----UGG-----------AGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 41478 0.67 0.488408
Target:  5'- cGACGUcgcgaCGCCCGcCGAugC-CGAaccgcacccGGCCa -3'
miRNA:   3'- aCUGCG-----GCGGGC-GCUugGaGCU---------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 41262 0.67 0.478548
Target:  5'- cGACGUCGCCgGCGAucguCCccaucagUGAAccGCCg -3'
miRNA:   3'- aCUGCGGCGGgCGCUu---GGa------GCUU--CGG- -5'
16302 5' -58.8 NC_004084.1 + 41192 0.7 0.352406
Target:  5'- gGACGaacacgaCGCCCGCGAcGCUggCGAAacGCCg -3'
miRNA:   3'- aCUGCg------GCGGGCGCU-UGGa-GCUU--CGG- -5'
16302 5' -58.8 NC_004084.1 + 41064 0.66 0.54937
Target:  5'- aGAaGCgGUCCGCGAguACgUCGAcgagacgaugcgGGCCg -3'
miRNA:   3'- aCUgCGgCGGGCGCU--UGgAGCU------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 40061 0.68 0.459129
Target:  5'- aGcCGUCGacCCCGCGAACgUCGGgauGGUCg -3'
miRNA:   3'- aCuGCGGC--GGGCGCUUGgAGCU---UCGG- -5'
16302 5' -58.8 NC_004084.1 + 39611 0.75 0.1759
Target:  5'- gGACGUgGCCgGCGAcguCCUCGAcgAGUCg -3'
miRNA:   3'- aCUGCGgCGGgCGCUu--GGAGCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 39512 0.69 0.380812
Target:  5'- gGACGUcauCGUUCGCGAcguCCUCGAggaucuccucgugauGGCCa -3'
miRNA:   3'- aCUGCG---GCGGGCGCUu--GGAGCU---------------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 37375 0.67 0.507398
Target:  5'- gGugGCCGCCUGacuucgaCGAA-CUCGGcagacgcuGGCCg -3'
miRNA:   3'- aCugCGGCGGGC-------GCUUgGAGCU--------UCGG- -5'
16302 5' -58.8 NC_004084.1 + 36946 0.66 0.55978
Target:  5'- cGAuCGCCGCCCuCGAGgg-CG-AGCCg -3'
miRNA:   3'- aCU-GCGGCGGGcGCUUggaGCuUCGG- -5'
16302 5' -58.8 NC_004084.1 + 36161 0.76 0.141948
Target:  5'- gUGACGCCGCauuCCGCGAgaucuucACCgUUGAAGCg -3'
miRNA:   3'- -ACUGCGGCG---GGCGCU-------UGG-AGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 35357 0.67 0.528742
Target:  5'- -cGCGUCGCCgGCGAcgAUCgCGAAGUg -3'
miRNA:   3'- acUGCGGCGGgCGCU--UGGaGCUUCGg -5'
16302 5' -58.8 NC_004084.1 + 34990 0.66 0.580752
Target:  5'- --uCGCCGCCUGCGugUCagCGAucAGCUg -3'
miRNA:   3'- acuGCGGCGGGCGCuuGGa-GCU--UCGG- -5'
16302 5' -58.8 NC_004084.1 + 34722 0.66 0.580752
Target:  5'- gGGCGUCGCCgguuCGCGAugAgCUCGcGGaCCa -3'
miRNA:   3'- aCUGCGGCGG----GCGCU--UgGAGCuUC-GG- -5'
16302 5' -58.8 NC_004084.1 + 34365 0.72 0.271074
Target:  5'- gGACGCCGCaaCCGCGuccaucGCCgucugGGAGCCc -3'
miRNA:   3'- aCUGCGGCG--GGCGCu-----UGGag---CUUCGG- -5'
16302 5' -58.8 NC_004084.1 + 33325 0.72 0.262527
Target:  5'- cUGcCGCCGCCgCGUGAaggaugcagcugagGCCUCGGAccucaaccGCCg -3'
miRNA:   3'- -ACuGCGGCGG-GCGCU--------------UGGAGCUU--------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.